View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_89 (Length: 387)

Name: NF1271_low_89
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_89
NF1271_low_89
[»] chr5 (5 HSPs)
chr5 (16-358)||(19411178-19411520)
chr5 (274-358)||(19154945-19155029)
chr5 (60-218)||(33700292-33700453)
chr5 (16-80)||(24267365-24267429)
chr5 (16-80)||(24343995-24344059)
[»] chr1 (2 HSPs)
chr1 (16-194)||(26330657-26330835)
chr1 (25-175)||(27774073-27774224)
[»] chr4 (2 HSPs)
chr4 (274-358)||(32751912-32751996)
chr4 (274-358)||(18480137-18480221)
[»] scaffold0763 (2 HSPs)
scaffold0763 (274-358)||(1721-1805)
scaffold0763 (274-358)||(4826-4910)
[»] chr6 (3 HSPs)
chr6 (185-243)||(23948329-23948387)
chr6 (28-91)||(17728705-17728767)
chr6 (149-277)||(23905519-23905649)
[»] chr3 (3 HSPs)
chr3 (124-277)||(15487500-15487648)
chr3 (61-110)||(20590244-20590293)
chr3 (278-357)||(36839063-36839141)
[»] chr8 (1 HSPs)
chr8 (40-91)||(14444446-14444495)
[»] chr7 (3 HSPs)
chr7 (27-91)||(5486448-5486512)
chr7 (99-173)||(7776255-7776329)
chr7 (27-133)||(27223136-27223240)
[»] scaffold0008 (1 HSPs)
scaffold0008 (16-91)||(264446-264521)
[»] scaffold0010 (1 HSPs)
scaffold0010 (34-110)||(168896-168973)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 19411520 - 19411178
Alignment:
Q  16 atcagaagaagaaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacattacattgacatcacaaatacatcaaa 115  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  19411520 atcaaaagaagaaaatcaagattacttgaaaaagatcagaaacatcttcaaacttgagattcattctcaaacattatattgacatcacaaatacaccaaa 19411421  T
Q  116 gtatccactatatctttggcatacctttaagtgtatttgaaaagttcataatcaccttagcatgatctgattgaacttaaatagaaaagttcatattcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19411420 gtatccactatatctttggcatacctttaagtgtatttgaaaagttcataatcaccttagcatgatctgattgaacttaaatagaaaagttcatattcat 19411321  T
Q  216 cttttggtgatcaggttgaacttagagagaaatagagaaaagtcatcgtgagatcaaattgaaaattgtggattcaatttctagaccactatagatgtat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19411320 cttttggtgatcaggttgaacttagagagaaatagagaaaagtcatcgtgagatcaaattgaaaattgtggattcaatttctagaccactatagatgtat 19411221  T
Q  316 tgagacaattcagctgcggtttttatggctaagaatagtaaaa 358  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  19411220 tgagacaattcagctgcgttttttatggctaagaatagtaaaa 19411178  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 19155029 - 19154945
Alignment:
Q  274 ttgaaaattgtggattcaatttctagaccactatagatgtattgagacaattcagctgcggtttttatggctaagaatagtaaaa 358  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||| |||||    
T  19155029 ttgaaaattgtggattcaatttctagaccactaaagatgtattgtgacaattcaactgctgtttttatggctaagaataataaaa 19154945  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 33700453 - 33700292
Alignment:
Q  60 tcttcaaacttgagattca-ttctcaaacattacattgacatcacaaatacatcaaagtatccactatatctttggcat-acctttaagtgtatttgaaa 157  Q
    ||||||||||||||||||| ||||||||||||| ||  | |||||| ||||| |||||| |||| ||||||||||  ||  ||||| ||||||||| |||    
T  33700453 tcttcaaacttgagattcacttctcaaacattagatacaaatcacatatacaccaaagtctccattatatctttgaaatgtccttttagtgtatttaaaa 33700354  T
Q  158 agttcataatcaccttagcatgatctgattgaactta-aatagaaaagttcatattcatctt 218  Q
    |||||| | ||||||  |  ||||| | ||||||||| |  | |||||||||||||||||||    
T  33700353 agttcagattcacctgggtctgatcaggttgaacttagagaacaaaagttcatattcatctt 33700292  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 24267429 - 24267365
Alignment:
Q  16 atcagaagaagaaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcatt 80  Q
    |||||||| ||||| |  ||||| |||||||||||||| | || ||||||||| |||||||||||    
T  24267429 atcagaagtagaaagtgtagattgcttgaaaaagatcaaattcttcttcaaacatgagattcatt 24267365  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 24344059 - 24343995
Alignment:
Q  16 atcagaagaagaaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcatt 80  Q
    |||||||| ||||| |  ||||| |||||||||||||| | || ||||||||| |||||||||||    
T  24344059 atcagaagtagaaagtgtagattgcttgaaaaagatcaaattcttcttcaaacatgagattcatt 24343995  T

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Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 26330835 - 26330657
Alignment:
Q  16 atcagaagaagaaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacattacattgacatcacaaatacatcaaa 115  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || || || | ||||  |   ||    
T  26330835 atcagaagcagaaaatcaagattacttgaaaaatatcagaatcatcttcaaacttgagattcattctcaaacattagatagaaattataaatttagataa 26330736  T
Q  116 gtatccactatatctttggcatacctttaagtgtatttgaaaagttcataatcaccttagcatgatctgattgaactta 194  Q
    || | ||||||||||||  || | |||||||||||||||||||||| | | |||||||||  |||||||||| ||||||    
T  26330735 gtgtacactatatctttcacaaatctttaagtgtatttgaaaagtttagattcaccttagtgtgatctgattcaactta 26330657  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 27774073 - 27774224
Alignment:
Q  25 agaaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacattacattgacatcacaaatacatcaaagtatccact 124  Q
    ||||||||| |||| |||||||||||||| |||| ||||||||||||| ||||||||||||||  || || || |||  ||||||| | |||  || | |    
T  27774073 agaaaatcaggatttcttgaaaaagatcagaatcgtcttcaaacttgatattcattctcaaactatagatagaaatccaaaatacacccaagcctctaat 27774172  T
Q  125 atatctttggcatacctttaagtgtatttg-aaaagttcataatcaccttag 175  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  27774173 atatctttggcatacctttaagtgtatttgaaaaagttcagattcaccttag 27774224  T

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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 32751912 - 32751996
Alignment:
Q  274 ttgaaaattgtggattcaatttctagaccactatagatgtattgagacaattcagctgcggtttttatggctaagaatagtaaaa 358  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  32751912 ttgaaaattgtggattcaatttctagaccactaaagatgtattgtgacaattcagctgctgtttttatggctaagaataataaaa 32751996  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 18480137 - 18480221
Alignment:
Q  274 ttgaaaattgtggattcaatttctagaccactatagatgtattgagacaattcagctgcggtttttatggctaagaatagtaaaa 358  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||| |||||    
T  18480137 ttgaaaattgtggattcaatttctagaccactaaagatgtactgtgacaattcagctgctgtttttatggctaagaataataaaa 18480221  T

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Target: scaffold0763 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0763
Description:

Target: scaffold0763; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 1721 - 1805
Alignment:
Q  274 ttgaaaattgtggattcaatttctagaccactatagatgtattgagacaattcagctgcggtttttatggctaagaatagtaaaa 358  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||| ||| ||||||||||||||||||| |||||    
T  1721 ttgaaaattgtggattcaatttctagaccactaaagatgtactgtgacaattcagatgctgtttttatggctaagaataataaaa 1805  T

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Target: scaffold0763; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 4826 - 4910
Alignment:
Q  274 ttgaaaattgtggattcaatttctagaccactatagatgtattgagacaattcagctgcggtttttatggctaagaatagtaaaa 358  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||  ||| ||||||||||||||||||| |||||    
T  4826 ttgaaaattgtggattcaatttctagaccactaaagatgtaatgtgacaattcaaatgctgtttttatggctaagaataataaaa 4910  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 23948387 - 23948329
Alignment:
Q  185 attgaacttaaatagaaaagttcatattcatcttttggtgatcaggttgaacttagaga 243  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  23948387 attgaacttaaatagaaaagttcatattcaccttttggtgatcaagttgaacttagaga 23948329  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 17728705 - 17728767
Alignment:
Q  28 aaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacatta 91  Q
    |||||||||||| || ||||||||||  ||||||||||||||||||||  | ||||||||||||    
T  17728705 aaatcaagattattt-aaaaagatcagtatcatcttcaaacttgagatctagtctcaaacatta 17728767  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 277
Target Start/End: Original strand, 23905519 - 23905649
Alignment:
Q  149 tatttgaaaagttcataatcaccttagcatgatctgattgaacttaaatagaaaa--gttcatattcatcttttggtgatcaggttgaacttagagagaa 246  Q
    ||||||||||||||| | ||||||| |  || || ||||||||||  ||| ||||  ||||| ||||| ||||  |||||||  || |||||||||||||    
T  23905519 tatttgaaaagttcagattcacctttgagtgttcagattgaactttgataaaaaaatgttcagattcacctttgtgtgatcaattttaacttagagagaa 23905618  T
Q  247 atagagaaaagtcatcgtgagatcaaattga 277  Q
    | ||| ||| || || |||||||||||||||    
T  23905619 agagataaaggttattgtgagatcaaattga 23905649  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 15487500 - 15487648
Alignment:
Q  124 tatatctttggcatacctttaagtgtatttgaaaagttcataatcaccttagcatgatctgattgaacttaaatagaaaagttcatattcatcttttggt 223  Q
    ||||| |||||||||  |||||||||||||||||| || | | |||||| ||  |||||  ||||||||||    |||||| | | ||||| ||||| ||    
T  15487500 tatatatttggcatatttttaagtgtatttgaaaattttaaattcacct-agtgtgatcaaattgaactta----gaaaagattagattcaccttttagt 15487594  T
Q  224 gatcaggttgaacttagagagaaatagagaaaagtcatcgtgagatcaaattga 277  Q
    ||||| |||||||||||| ||||||||| ||| ||||| |||||||||||||||    
T  15487595 gatcaagttgaacttagaaagaaatagaaaaatgtcattgtgagatcaaattga 15487648  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 20590244 - 20590293
Alignment:
Q  61 cttcaaacttgagattcattctcaaacattacattgacatcacaaataca 110  Q
    ||||||||||||||||||||||||||||||| || |  ||||||||||||    
T  20590244 cttcaaacttgagattcattctcaaacattagatagcaatcacaaataca 20590293  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 36839063 - 36839141
Alignment:
Q  278 aaattgtggattcaatttctagaccactatagatgtattgagacaattcagctgcggtttttatggctaagaatagtaaa 357  Q
    |||||||||||||||||||||||||| ||   |||| ||| |||||||||| |||||  | |||||||||||||| ||||    
T  36839063 aaattgtggattcaatttctagaccattaagtatgtcttgtgacaattcagttgcgg-ctctatggctaagaataataaa 36839141  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 14444446 - 14444495
Alignment:
Q  40 cttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacatta 91  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  14444446 cttgaaaaagatca--atcaccttcaaacttgagattcattctcaaacatta 14444495  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 5486448 - 5486512
Alignment:
Q  27 aaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacatta 91  Q
    ||||| || ||| ||||||| | ||||||||||||||  ||||||||||||||||||||||||||    
T  5486448 aaaataaaaattgcttgaaagaaatcataatcatcttttaacttgagattcattctcaaacatta 5486512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 7776329 - 7776255
Alignment:
Q  99 atcacaaatacatcaaagtatccactatatctttggcatacctttaagtgtatttgaaaagttcataatcacctt 173  Q
    |||||||| |||  ||||| | |||||||||||| ||| | ||||||||||||||||||| |||||| |||||||    
T  7776329 atcacaaacacactaaagtctacactatatctttagcacatctttaagtgtatttgaaaatttcatattcacctt 7776255  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 27223136 - 27223240
Alignment:
Q  27 aaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacattacattgacatcacaaatacatcaaagtatccactat 126  Q
    ||||||||| || ||| |||||||||||||||||| ||||| || |||||||||||||| ||||| || |  || ||||||| |   ||| |||||||||    
T  27223136 aaaatcaaggttgctt-aaaaagatcataatcatcgtcaaaattaagattcattctcaa-cattagatagcaattacaaatatactcaagcatccactat 27223233  T
Q  127 atctttg 133  Q
    |||||||    
T  27223234 atctttg 27223240  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 264521 - 264446
Alignment:
Q  16 atcagaagaagaaaatcaagattacttgaaaaagatcataatcatcttcaaacttgagattcattctcaaacatta 91  Q
    |||||||| | ||| ||| |||| | ||||||| || ||||||||||| || |||||||||||||||||| |||||    
T  264521 atcagaagcaaaaagtcatgatttcatgaaaaatatgataatcatctttaagcttgagattcattctcaatcatta 264446  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 168973 - 168896
Alignment:
Q  34 agattacttgaaaaagatcataatcatcttcaaacttgagattca-ttctcaaacattacattgacatcacaaataca 110  Q
    ||||| ||||||| |||||||| ||||||   ||||| ||||||| ||||||||||||| || || ||||||||||||    
T  168973 agatttcttgaaagagatcatattcatctcacaacttaagattcacttctcaaacattagatagaaatcacaaataca 168896  T

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