View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_91 (Length: 386)
Name: NF1271_low_91
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_91 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 82 - 374
Target Start/End: Original strand, 24681501 - 24681793
Alignment:
| Q |
82 |
cagagaactggcttgacacagccgcctaagaaattaggtcacggtcgcggatcagaagagagttacttgtgtgacgcatctatatctggggatgatcggg |
181 |
Q |
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| T |
24681501 |
cagagaactggcttgacacagccgcctaagaaattaggtcacggtcgcggatcagaagagagttacttgtgtgacgcatctatatctggggatgatcggg |
24681600 |
T |
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| Q |
182 |
tagaactcagggctttcgggtgtaaatcggggaacgatcaattgggtgtccggggtgctataaagataggggacgatacgctttgccgtgccagctatga |
281 |
Q |
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| T |
24681601 |
tagaactcagggctttcgggtgtaaatcggggaacgatcaattgggtgtccggggtgctataaagataggggacgatacgctttgccgtgccagctatga |
24681700 |
T |
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| Q |
282 |
ggctatatcctcgttgagtcgggcgcttgggaagactttcctgtcgggttggaaaaccaacatcggaccgggatgttgttccctccttgtctg |
374 |
Q |
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| T |
24681701 |
ggctatattctcgttgagtcgggcgcttgggaagactttcctgtcgggttggaaaaccaacatcggaccgggatgttgttccctccttgtctg |
24681793 |
T |
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Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 54541522 - 54541443
Alignment:
| Q |
140 |
agagttacttgtgtgacgcatctatatctggggatgatcgggtagaactcagggctttcgggtgtaaatcggggaacgat |
219 |
Q |
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| T |
54541522 |
agagttacttgtgtgacgcatctatatctggggatgatcgggtagaacccagggctttcgggtgtaaatcggggaacgat |
54541443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 37754806 - 37754734
Alignment:
| Q |
302 |
gggcgcttgggaagactttcctgtcgggttggaaaaccaacatcggaccgggatgttgttccctccttgtctg |
374 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
37754806 |
gggcgcttgggaagactgtcctgtcgggtttgaaaaccaacaacggactgggatgttgttccctccttgtctg |
37754734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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