View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_94 (Length: 368)
Name: NF1271_low_94
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 44156001 - 44155920
Alignment:
| Q |
213 |
gaaacatatagtatagtattgtatgaaatttgatgaatatatactc-taaggtttcaaaatgtaaaaaatatatagttttat |
293 |
Q |
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| T |
44156001 |
gaaagatatagtatagtattgtatgaaatttgatgaatatatactcttaaggtttcaaaatgtaaaaaatatatagttttat |
44155920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 44156103 - 44156034
Alignment:
| Q |
131 |
ttgtcccccgagctaatcataagccttatcctcttacatgattcaacaaacatcctagaggaaaggaaag |
200 |
Q |
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| T |
44156103 |
ttgtcccccgagctaatcataagccttatcctcttacatgattcaacaaacatcctagaggaaaggaaag |
44156034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 44156225 - 44156154
Alignment:
| Q |
9 |
caacaatattagtaaatcagggggtcaagaaccaaacttgtgatatcaatcaatcctataattatattgtgt |
80 |
Q |
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| T |
44156225 |
caacaatattagtaaatcagggggtcaagaatcaaacttgtgatatcaatcaatcctataattatattgtgt |
44156154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 44155892 - 44155859
Alignment:
| Q |
306 |
aaaataataactagctgtagatggaatatatatg |
339 |
Q |
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| T |
44155892 |
aaaataataactaggtgtagatggaatatatatg |
44155859 |
T |
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