View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_96 (Length: 367)
Name: NF1271_low_96
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_96 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 87 - 358
Target Start/End: Original strand, 12780 - 13051
Alignment:
| Q |
87 |
cagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12780 |
cagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagat |
12879 |
T |
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| Q |
187 |
tacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcacc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12880 |
tacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcacc |
12979 |
T |
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| Q |
287 |
aatccgtatgaatgagaaaattagatgaagactcaatagttcgctatcacaattccacccgcatctgtggtg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12980 |
aatccgtatgaatgagaaaattagatgaagactcaatagttctctatcacaattccacccgcatctgtggtg |
13051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 87 - 358
Target Start/End: Complemental strand, 2170481 - 2170210
Alignment:
| Q |
87 |
cagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170481 |
cagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagat |
2170382 |
T |
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| Q |
187 |
tacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcacc |
286 |
Q |
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| T |
2170381 |
tacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcacc |
2170282 |
T |
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| Q |
287 |
aatccgtatgaatgagaaaattagatgaagactcaatagttcgctatcacaattccacccgcatctgtggtg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2170281 |
aatccgtatgaatgagaaaattagatgaagactcaatagttctctatcacaattccacccgcatctgtggtg |
2170210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 87 - 305
Target Start/End: Original strand, 2188139 - 2188357
Alignment:
| Q |
87 |
cagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagat |
186 |
Q |
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||||||||||||||||||||||||| |||| ||||| |||| |||||||||||| || | || || |||||||| ||||||||||||||||||||| |
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| T |
2188139 |
cagatcatacatatctatatgatctgcgacagcaagtgatggaactcgaatctgacctggagaaaacagatttaatagatgaatggatccatgcagagat |
2188238 |
T |
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| Q |
187 |
tacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcacc |
286 |
Q |
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|||||||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
2188239 |
tacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaactagtatggaggatattcgatttacc |
2188338 |
T |
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| Q |
287 |
aatccgtatgaatgagaaa |
305 |
Q |
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|||||| || | ||||||| |
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| T |
2188339 |
aatccgcataattgagaaa |
2188357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 16694585 - 16694636
Alignment:
| Q |
225 |
ttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatat |
276 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |
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| T |
16694585 |
ttatagaaagtggaattcacttattcaagcagaaaagtagcatggaggatat |
16694636 |
T |
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