View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272-Insertion-10 (Length: 282)
Name: NF1272-Insertion-10
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272-Insertion-10 |
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| [»] chr8 (7 HSPs) |
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| [»] scaffold1444 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 17986384 - 17986658
Alignment:
| Q |
8 |
agactctcttaca-catgattgggtacccatgcaatggccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataa |
106 |
Q |
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| T |
17986384 |
agactctcttacagcatgattgggtacccatgcaatggccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataa |
17986483 |
T |
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| Q |
107 |
agcacatcaggatccatacctctcgtgtcatggtgggcatatcgttagtgccttcgctttagttccatcagaggccactaaaggaactatgtatgttgat |
206 |
Q |
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| T |
17986484 |
agcacatcaggatccatacctctcgtgtcatggtgg-catattgttagtgccttcgctttagttccatcagaggccactaaaggaactatgtatgttgat |
17986582 |
T |
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| Q |
207 |
gttgcattgacttggtggcaataaaatacaacttgttcgaaatttagtttatgacacatcacggctttgtctccaa |
282 |
Q |
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| T |
17986583 |
gttgcattgacttggtggcaataaaatacaacttgatcgaaatttagtttatgacacatcacggctttgtctccaa |
17986658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 282
Target Start/End: Complemental strand, 17107669 - 17107420
Alignment:
| Q |
32 |
acccatgcaatggccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataaagcacatcaggatccatacctctcg |
131 |
Q |
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| T |
17107669 |
acccaagcaatagccttgttgccaacaaaatggcaaatagggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttg |
17107570 |
T |
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| Q |
132 |
tgtcatggtgggcatatcgttagtgccttcgctttagttccatcagaggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaa |
231 |
Q |
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| T |
17107569 |
tatcatggt-gacaaatagttagtgccttagctttagttccatcagaagccaccaatagcaccatgtaaactgttgttgcattaacttggtggcaataaa |
17107471 |
T |
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| Q |
232 |
atacaacttgttcgaaatttagtttatgacacatcacggctttgtctccaa |
282 |
Q |
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|||| | | || |||||| | | ||||||||||||| ||||||||||||| |
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| T |
17107470 |
ataccatgtctttgaaattcaatctatgacacatcactgctttgtctccaa |
17107420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 280
Target Start/End: Original strand, 17956244 - 17956494
Alignment:
| Q |
29 |
ggtacccatgcaatggccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataaagcacatcaggatccatacctc |
128 |
Q |
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|||||||| |||| ||||||||||| || |||||| || | || | ||||||||||| ||||||||||| || |||||||||| |||||||||||||| |
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| T |
17956244 |
ggtacccaagcaacggccttgttgccaataaaatggcaaacagggacagttccaggcttaactttgagaacatcgtaaagcacattaggatccatacctc |
17956343 |
T |
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| Q |
129 |
tcgtgtcatggtgggcatatcgttagtgccttcgctttagttccatcagaggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaat |
228 |
Q |
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| T |
17956344 |
gagtatcatggtga-cagattgttagtgccttagatttggttccatcggatgccaccaatggaaccatgtaagttgttgtcgcattgacttggtggcaat |
17956442 |
T |
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| Q |
229 |
aaaatacaacttgttcgaaatttagtttatgacacatcacggctttgtctcc |
280 |
Q |
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| |||| ||||| || ||||| | | |||| |||||||| || |||||||| |
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| T |
17956443 |
agaatagaacttttttaaaattcaatctatggcacatcactgcgttgtctcc |
17956494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 280
Target Start/End: Original strand, 17945294 - 17945496
Alignment:
| Q |
77 |
gttccaggcttgactttgagaacttcataaagcacatcaggatccatacctctcgtgtcatggtgggcatatcgttagtgccttcgctttagttccatca |
176 |
Q |
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|||||||||||||||| |||||||||||| |||| || ||||||||||||||| || ||||||| |||| || ||||||||||| | ||||||||||||| |
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| T |
17945294 |
gttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggt-ggcagatagttagtgccttggatttagttccatca |
17945392 |
T |
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| Q |
177 |
gaggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaaatacaacttgttcgaaatttagtttatgacacatcacggctttgt |
276 |
Q |
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|||||||| || ||||| ||||| || | ||| || |||| ||||||||||| ||| |||| | || | ||| | | ||||||||||||| || |||| |
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| T |
17945393 |
gaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaacctttttaagattcattctatgacacatcactgcgttgt |
17945492 |
T |
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| Q |
277 |
ctcc |
280 |
Q |
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|||| |
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| T |
17945493 |
ctcc |
17945496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 17117149 - 17117362
Alignment:
| Q |
20 |
acatgattgggtacccatgcaatggccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataaagcacatcaggat |
119 |
Q |
| |
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|||| ||| |||||||| |||||||||||||||| || |||||| || || || | ||||| ||||||||||||||||| | ||| || |||||||| |
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| T |
17117149 |
acattattaggtacccaagcaatggccttgttgccaataaaatggcaaatagggacagttcctggcttgactttgagaaccttatagagatgatcaggat |
17117248 |
T |
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| Q |
120 |
ccatacctctcgtgtcatggtgggcatatcgttagtgccttcgctttagttccatcagaggccactaaaggaactatgtatgttgatgttgcattgactt |
219 |
Q |
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||||||||| || ||||||| | || || || | |||||| ||||||||||||||||| ||||| || || || ||||| || ||||||||| |||| |
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| T |
17117249 |
tcatacctcttgtatcatggt-gacaaatagtcactgccttagctttagttccatcagaagccaccaatggcaccatgtaaactgttgttgcattaactt |
17117347 |
T |
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| Q |
220 |
ggtggcaataaaata |
234 |
Q |
| |
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|||| ||| |||||| |
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| T |
17117348 |
ggtgacaagaaaata |
17117362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 17004370 - 17004238
Alignment:
| Q |
150 |
gttagtgccttcgctttagttccatcagaggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaaatacaacttgttcgaaat |
249 |
Q |
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||||||||||| ||||| |||||||| | ||||| || || || ||||| |||| |||||||| |||||||| |||||||||||||| | || ||||| |
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| T |
17004370 |
gttagtgccttagctttggttccatctaaagccaccaatggcaccatgtaagttgtagttgcattaacttggtgacaataaaatacaacatttttgaaat |
17004271 |
T |
|
| Q |
250 |
ttagtttatgacacatcacggctttgtctccaa |
282 |
Q |
| |
|
||| | ||||||||||||| |||||||||||| |
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| T |
17004270 |
ttaatctatgacacatcaccactttgtctccaa |
17004238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 17999208 - 17999413
Alignment:
| Q |
44 |
gccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataaagcacatcaggatccatacctctcgtgtcatggtggg |
143 |
Q |
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|||||||| | ||||||||| || | || || ||||| |||||||||||||||||||||| |||| || |||| ||||||||| ||||||||||| |
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| T |
17999208 |
gccttgttaccaacaaaatggcagacagggatagttcctggcttgactttgagaacttcatcgagcaaattcggattcatacctcttgtgtcatggtga- |
17999306 |
T |
|
| Q |
144 |
catatcgttagtgccttcgctttagttccatcagaggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaaatacaacttgtt |
243 |
Q |
| |
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|| | | ||| || ||||| ||||||||||||||| ||||| || ||||| |||| || |||||| |||||||| |||||||||||||||| | |
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| T |
17999307 |
caagcagccaatgcattaactttacttccatcagaggccaacaaagggaccatgtaagttgttgatgcattcacttggtgacaataaaatacaactttct |
17999406 |
T |
|
| Q |
244 |
cgaaatt |
250 |
Q |
| |
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||||||| |
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| T |
17999407 |
cgaaatt |
17999413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 94 - 1
Alignment:
| Q |
28 |
gggtacccatgcaatggccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataaagcacatcaggatcc |
121 |
Q |
| |
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||||||||| |||||||||||||| | ||||||||| || || || | |||||||||||||||||||||| ||| || ||||||||||||||| |
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| T |
94 |
gggtacccaagcaatggccttgttaccaacaaaatggcaaatagggacagttccaggcttgactttgagaatttcgtagagcacatcaggatcc |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 17258190 - 17258256
Alignment:
| Q |
216 |
acttggtggcaataaaatacaacttgttcgaaatttagtttatgacacatcacggctttgtctccaa |
282 |
Q |
| |
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||||||||||||| |||||||||| ||||||||| | | ||||||||||||| || |||||||||| |
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| T |
17258190 |
acttggtggcaattgaatacaactttttcgaaattcaatctatgacacatcactgcattgtctccaa |
17258256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 17257997 - 17258117
Alignment:
| Q |
22 |
atgattgggtacccatgcaatggccttgttgctaacaaaatgacatattggaattgttccaggcttgactttgagaacttcataaagcacatcaggatcc |
121 |
Q |
| |
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||||||||| ||||||||| ||||| |||| || ||||| || ||||| || || ||||| | |||||| ||| |||||||||||| |||| || | |
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| T |
17257997 |
atgattgggaacccatgcagcagccttattgccaatgaaatggcaaattgggatggtaccaggttcgacttttagagcttcataaagcaactcagcattc |
17258096 |
T |
|
| Q |
122 |
atacctctcgtgtcatggtgg |
142 |
Q |
| |
|
|| ||||| |||||||||||| |
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|
| T |
17258097 |
atgcctcttgtgtcatggtgg |
17258117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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