View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272-Insertion-11 (Length: 865)
Name: NF1272-Insertion-11
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 733; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 7 - 865
Target Start/End: Original strand, 25671055 - 25671917
Alignment:
| Q |
7 |
aaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaacaaaatcatagtaatagcagcaaaagta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671055 |
aaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaacaaaatcatagtaatagcagcaaaagta |
25671154 |
T |
|
| Q |
107 |
aactgaaaataaacaagtgaagccataggnnnnnnnggttcttccataggtgtttcaatatcaacaccattcttgtaatagtgagtacttgcaggtactt |
206 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671155 |
aactgaaaataaacaagtgaagccataggaaaaaaaggttcttccataggtgtttcaatatcaacaccattcttgtaatagtgagtacttgcaggtactt |
25671254 |
T |
|
| Q |
207 |
tcgctctagcaacaagaaatttttgtcctaaagccggtgcacctttaccccagaacggtaaaagttcgtcaccaaaagccattctataagcaacaagaac |
306 |
Q |
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| T |
25671255 |
ttgctctagcaacaagaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttcatcaccaaaagccattctataagcaacaagaac |
25671354 |
T |
|
| Q |
307 |
ccaacagattaaaactgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcct |
406 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671355 |
ccaacagattaatactgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcct |
25671454 |
T |
|
| Q |
407 |
ggcatgctttgtaaaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaaccattctggtgatgttggaagatgtgcttggtatg |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671455 |
ggcatgctttgtaaaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaaccattctggtgatgttggaagatgtgcttggtatg |
25671554 |
T |
|
| Q |
507 |
ctggtgatgctgccatg---attctttgttcaagtcttgttcttcaagttttgatgaaattttaacaggattttcagtatgtacaaaactagtatttgtt |
603 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671555 |
ctggtgatgctgccatggtagttctttgttcaagtcttgttcttcaagttttgatgaaattttaacaggattttcagtatgtacaaaactagtatttgtt |
25671654 |
T |
|
| Q |
604 |
tgagatgaatcagnnnnnnnnnnnnnggttactatataatgaaatgaattaacatggagttgaaaagttgtatacttggtttgaatatttggaagctacg |
703 |
Q |
| |
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| T |
25671655 |
tgagatgaatcagtttttgattttttggttactatataatgaaatgaattaacatggagttgaaaagttgtatacttggtttgaatatttggaagctacg |
25671754 |
T |
|
| Q |
704 |
tgtaaactgtcattgggttctcatagcaagttgtactagtatttaactaccaatctagaaagggaag-nnnnnnnnatcttaaacttttgacttttcgtt |
802 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25671755 |
tgtaaactgtcattgggttctcatagcaagttgtactagtatttaactaccaatctagaaagggaagtttttttttatcttaaacttttgacttttcgtt |
25671854 |
T |
|
| Q |
803 |
gagaatgatgggtttggtttaaaaataaaagtggaattaggattgtcatcaacttattaaaga |
865 |
Q |
| |
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| T |
25671855 |
gagaatgatgggtttggtttaaaaatacaagtggaattaggattgtcatcaacttattaaaga |
25671917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 220 - 485
Target Start/End: Original strand, 5625476 - 5625741
Alignment:
| Q |
220 |
aagaaatttttgtcctaaagccggtgcacctttaccccagaacggtaaaagttcgtcaccaaaagccattctataagcaacaagaacccaacagattaaa |
319 |
Q |
| |
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|||||||||||| ||||| | ||||||||||||||||| || || |||||||| |||||||||||||| | ||| | |||||||||||| |||| |
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| T |
5625476 |
aagaaatttttgacctaatgaaggtgcacctttaccccaaaatggaaaaagttcatcaccaaaagccatacggtaacataaaagaacccaacatattagc |
5625575 |
T |
|
| Q |
320 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
419 |
Q |
| |
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|||| |||| ||||||| |||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| || |||||||||||||||| |
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| T |
5625576 |
actgatgcataagcataaagtgccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgta |
5625675 |
T |
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| Q |
420 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaaccattctggtgatg |
485 |
Q |
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| T |
5625676 |
gaccaactagggttgatgctgtcatttgccatgagttgtctcctttgtttagccattgtggtgatg |
5625741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 5625267 - 5625394
Alignment:
| Q |
8 |
aaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaacaaaatcatagtaatagcagcaaaagtaa |
107 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||| | |||||||||||||||| | | |
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| T |
5625267 |
aaaatgagccaaagaggtacaaaagccatccaagccctaatgttcattcttccaagaacagatccagctaacaaaataacagtaatagcagcaaaattga |
5625366 |
T |
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| Q |
108 |
actgaaaataaacaagtgaagccatagg |
135 |
Q |
| |
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| T |
5625367 |
attgaaaataaacaagtgaagccatagg |
5625394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 221 - 481
Target Start/End: Original strand, 39726730 - 39726990
Alignment:
| Q |
221 |
agaaatttttgtcctaaagccggtgcacctttaccccagaacggtaaaagttcgtcaccaaaagccattctataagcaacaag-aacccaacagattaaa |
319 |
Q |
| |
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|||||||| || |||||||| || || |||||||||| || |||||||||| |||||||| | ||| ||||||| || | |||||||||||||| | |
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| T |
39726730 |
agaaatttctggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcc-catgtaacccaacagattata |
39726828 |
T |
|
| Q |
320 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
419 |
Q |
| |
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|| || || ||||| || || ||||||||||| || || || ||||||||||||||||||||||| ||||||| || |||||||||||||||||||| | |
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| T |
39726829 |
accgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaa |
39726928 |
T |
|
| Q |
420 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaaccattctggt |
481 |
Q |
| |
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||||| || || |||| | |||||||||||| ||||||||||||||||||||| |||||| |
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| T |
39726929 |
ttccaacaagggtagctgatatcatttgccatgagttgtctcctttgtttaaccagtctggt |
39726990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 250 - 375
Target Start/End: Original strand, 13350166 - 13350291
Alignment:
| Q |
250 |
tttaccccagaacggtaaaagttcgtcaccaaaagccattctataagcaacaagaacccaacagattaaaactgctgcaaaagcatatagtgccatgaaa |
349 |
Q |
| |
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||||||||| || || |||||| |||||||| | |||||||||||| || ||||||||||| || || |||||| ||||| |||| |||||| |
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| T |
13350166 |
tttaccccaaaatggaaaaagtgtatcaccaaatgacattctataagcccaaaaaacccaacagaaaaatacacatgcaaatgcatagagtgacatgaat |
13350265 |
T |
|
| Q |
350 |
gctgaattcactgcccatttcttttt |
375 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
13350266 |
gctgaattcactgcccatttcttttt |
13350291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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