View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1272-Insertion-2 (Length: 309)
Name: NF1272-Insertion-2
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 6753636 - 6753542
Alignment:
| Q |
137 |
tctcatacatatatttcaacaaaatcatatgtaacaacatttatccacagtcgtataaaaacaacatttcatcaaatacacaaatcacatgaaaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
6753636 |
tctcatacatatatttcaacaaaatcatatgtaacaacatatatccacagtcgtataaaaacaacatttcatcaaatacagaaatcacatcaaaa |
6753542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 6784064 - 6784171
Alignment:
| Q |
109 |
atacaaatatgcaacataccaacatgtttctcatacatatatttcaacaaaatcatatgtaacaacatttatccacagtcgtataaaaacaacatttcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| || || ||||| |||||||||||||||| |
|
|
| T |
6784064 |
atacaaatatgcaacataccaacatgcttctcatacatatatttcaataaaattatatgtaacaacattgatatactgtcgt-taaaaacaacatttcaa |
6784162 |
T |
|
| Q |
209 |
caaatacac |
217 |
Q |
| |
|
|| |||||| |
|
|
| T |
6784163 |
catatacac |
6784171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 3384984 - 3385042
Alignment:
| Q |
117 |
atgcaacataccaacatgtttctcatacatatatttcaacaaaatcatatgtaacaacattt |
178 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || ||| ||| |||||||||||||| |
|
|
| T |
3384984 |
atgcaacatatcaacatgtttctcatacatatatt-catcaa--tcacatgtaacaacattt |
3385042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University