View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272-Insertion-3 (Length: 710)
Name: NF1272-Insertion-3
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272-Insertion-3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 395 - 710
Target Start/End: Complemental strand, 54252059 - 54251744
Alignment:
| Q |
395 |
attaattttagtaaatacttttcacctttgtgcctgggtcttgtcttggattgaaggccaaatttctagggggaaaagaaaagggaaagaaggagacatt |
494 |
Q |
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| T |
54252059 |
attaattttagtaaatacttttcacctttgtgcctgggtcttgtcttggattgaaggccagatttctagggggaaaagaaaaaggaaagaaggagacatt |
54251960 |
T |
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| Q |
495 |
tcattttcttcgttggagagaagaggagctttgggtttctacaatattttgcagtaaatagggatgcacctaatggtgtaggatttgagtcagtaatgct |
594 |
Q |
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| T |
54251959 |
tcattttcttcgttggagagaagaggagctttgggtttctacaatattttgcagtaaatagggatgcacctaatggtgtaggatttgagtcagtaatgct |
54251860 |
T |
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| Q |
595 |
ttaaatttggagggtccctttgaggtgcagactacacagacacttcaacatccaaacactgttttattaccgtttcatttttattgtcagcctttacatc |
694 |
Q |
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| T |
54251859 |
ttaaatttggagggtccctttgaggtacagactacacagacacttcaacatccaaacactgttttattaccgtttcatttttattgtcagcctttacatc |
54251760 |
T |
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| Q |
695 |
tgtctcttttactcta |
710 |
Q |
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| T |
54251759 |
tgtctcttttactcta |
54251744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 190 - 346
Target Start/End: Complemental strand, 54252239 - 54252083
Alignment:
| Q |
190 |
gtcaaatagcataaatagatgaataaatgaagaatttgaagtttgatcttaggctttatgtaaacgaaatagtgatcattattgtgtttgcttgatgatt |
289 |
Q |
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| T |
54252239 |
gtcaaatagcataaatagatgaataaatgaagaatttgaagtttgaacttaggctctatgtaaacgaaatagtgatcattattgtgtttgcttgatgatt |
54252140 |
T |
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| Q |
290 |
tttggatttggtgaaattattggtattttagataattattccataattcagtttgtt |
346 |
Q |
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| T |
54252139 |
tttggatttggtgaaattattggtattttagataattattccataattcagtttgtt |
54252083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 54252428 - 54252368
Alignment:
| Q |
9 |
ttcttgtacgttgttggtgatattggctacacggctcaatctgttagcttagtgatactgg |
69 |
Q |
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| T |
54252428 |
ttcttgtacgttgttggtgatattggctacacggctcaatctgttagcttagtgatactgg |
54252368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 54252286 - 54252257
Alignment:
| Q |
151 |
atatgcaatgagtgattattattattataa |
180 |
Q |
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| T |
54252286 |
atatgcaatgagtgattattattattataa |
54252257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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