View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272-Insertion-5 (Length: 443)

Name: NF1272-Insertion-5
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272-Insertion-5
NF1272-Insertion-5
[»] chr7 (3 HSPs)
chr7 (8-443)||(39790340-39790775)
chr7 (10-131)||(39411065-39411188)
chr7 (367-443)||(39411372-39411448)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 39790775 - 39790340
Alignment:
Q  8 tcccatactgtgataaaacttcgccgtcatttgggtctgctagtatggctctggagtaatactcctctgctccttcaaggtcttgtttgcactgtcaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39790775 tcccatactgtgataaaacttcgccgtcatttgggtctgctagtatggctctggagtaatactcctctgctccttcaaggtcttgtttgcactgtcaaat 39790676  T
Q  108 caaaacaacatcaattttgtattcatcgccaacagtactatagtatatccactaacaaatcaagtttgtgtgttgacttatagaaacattctataagttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39790675 caaaacaacatcaattttgtattcatcgccaacagtactatagtatatccactaacaaatcaagtttgtgtgttgacttatagaaacattctataagttg 39790576  T
Q  208 ttttcagcnnnnnnnnggattagctctctaggataacttttattaaaacagtttgattcattttnnnnnnnnnnnnaacaacttatgtataagcacttag 307  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||||||| |||||            ||||||||||||||||||||||||    
T  39790575 ttttcagcttttttttggattagctctctaggataacttttattaaaacagtttgatttatttttatatatataaaaacaacttatgtataagcacttag 39790476  T
Q  308 ttataagtgattgtgttgtaagaacttaannnnnnnattcaaacagaaggaaatagaagttacctgatacaaaaattgagcataattcctcaagaacaaa 407  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39790475 ttataagtgattgtgttgtaagaacttaatttttttattcaaacagaaggaaatagaagttacctgatacaaaaattgagcataattcctcaagaacaaa 39790376  T
Q  408 ggatttcctggattttgctgaaccattttcttgtaa 443  Q
    ||||||||||||||||||||||||||||||||||||    
T  39790375 ggatttcctggattttgctgaaccattttcttgtaa 39790340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 39411065 - 39411188
Alignment:
Q  10 ccatactgtgataaaacttcgccgtcatttgggtctgctagtatggctctggagtaatactcctctgctccttcaaggtcttgtttgcactgtcaaa--t 107  Q
    ||||||||||| | |||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||  |    
T  39411065 ccatactgtgacagaacttctccatcatttggatctgctagtatggctctggaataatattcctctgctccttcacggtcttgtttgcactgtcaaaact 39411164  T
Q  108 caaaacaacatcaattttgtattc 131  Q
    ||||||||||||||||||| ||||    
T  39411165 caaaacaacatcaattttgcattc 39411188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 39411372 - 39411448
Alignment:
Q  367 ttacctgatacaaaaattgagcataattcctcaagaacaaaggatttcctggattttgctgaaccattttcttgtaa 443  Q
    |||||||||||| ||| ||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||||    
T  39411372 ttacctgatacagaaactgagcataattcctcagaaacaatggatttcctggattttgttgaaccattttcttgtaa 39411448  T

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