View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272-Insertion-9 (Length: 474)
Name: NF1272-Insertion-9
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 60 - 471
Target Start/End: Original strand, 6359029 - 6359442
Alignment:
| Q |
60 |
ctttttatgtcttaccctttctgtatattctttgatccatgtacaaatgaaattgatttacagtt-atgtcgatgaagtcagatccttgagtatatgcag |
158 |
Q |
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| T |
6359029 |
ctttttatgtcttaccctttctgtatattctttgatccatgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcag |
6359128 |
T |
|
| Q |
159 |
attatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacattttgaatttaagctcgtccttgtaat |
258 |
Q |
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| T |
6359129 |
attatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacgttttgaatttaagctcgtccttgtaat |
6359228 |
T |
|
| Q |
259 |
tctctctatctactactgttattatttcgttattaaatatattgtttgataccttcaagctttacagaaatctcgatccaataacctaatcccttcgttt |
358 |
Q |
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| T |
6359229 |
tctctctatttactactgttattatttcgttattaaatatattgtttgataccttcaagcattacagaaatctcgatccaataacctaatcccttcgttt |
6359328 |
T |
|
| Q |
359 |
ttccactcataatcattgtacatcagctgcctccaacaacaccagcagcaataccttcgttgttggcaccatca-tgtgattgtcatcagcacacaccag |
457 |
Q |
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| T |
6359329 |
ttccactcataatcgttgtacatcagctgcctccaacaacaccagcagcaataccttcgttgttggcaccatcattgtgattgtcatcagcacacaccag |
6359428 |
T |
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| Q |
458 |
tcactcaaattcac |
471 |
Q |
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| T |
6359429 |
tcactcaaattcac |
6359442 |
T |
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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 32857393 - 32857285
Alignment:
| Q |
99 |
tgtacaaatgaaattgatttacagtt-atgtcgatgaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgaga |
197 |
Q |
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|||||||||||||||||||| | ||| || || ||||||||| |||||||| |||||| ||||| ||| |||||||| ||||| |||||| |||||||| |
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| T |
32857393 |
tgtacaaatgaaattgatttgctgtttatatccatgaagtcaaatccttgactatatgtagattctcatgaagctatttccatccataaaatgattgaga |
32857294 |
T |
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| Q |
198 |
aactgcaaa |
206 |
Q |
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| T |
32857293 |
aactgcaaa |
32857285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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