View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12720_low_13 (Length: 216)
Name: NF12720_low_13
Description: NF12720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12720_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 49247323 - 49247135
Alignment:
| Q |
18 |
ttctgcaggttcaggttgatttttattttccaatgaatcatttttctcctctgcaacaatgatttcttgtgtcttattctgagaaaca------gcacct |
111 |
Q |
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| T |
49247323 |
ttctgcaggttcaggttgatttttattttccaatgaatcatttttctcctctgcaacaatgatttcttgtgtcttattctgagaaacatcaccttcacct |
49247224 |
T |
|
| Q |
112 |
tccaggttcttctccaatgcattctcttgcttaacattcgttatctcattaggaacaacaacgacattgggctcctcaacaaccatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49247223 |
tccaggttcttctccaatgcattctcttgcttaaaattcgttatctcattaggaacaacaacgacattgggctcctcaacaaccatttt |
49247135 |
T |
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