View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12720_low_5 (Length: 313)

Name: NF12720_low_5
Description: NF12720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12720_low_5
NF12720_low_5
[»] chr6 (16 HSPs)
chr6 (8-207)||(27629956-27630155)
chr6 (8-207)||(27272830-27273029)
chr6 (62-206)||(20160508-20160652)
chr6 (62-206)||(22172179-22172323)
chr6 (83-201)||(28162485-28162603)
chr6 (83-201)||(13522323-13522441)
chr6 (83-201)||(33374506-33374624)
chr6 (268-313)||(27629853-27629898)
chr6 (1-189)||(4525032-4525220)
chr6 (1-189)||(29549221-29549409)
chr6 (83-201)||(8892560-8892678)
chr6 (53-206)||(22477521-22477674)
chr6 (83-201)||(8903795-8903913)
chr6 (113-206)||(22935125-22935218)
chr6 (113-206)||(23857570-23857663)
chr6 (1-201)||(24304871-24305071)
[»] chr4 (9 HSPs)
chr4 (5-202)||(15227638-15227835)
chr4 (5-201)||(1900025-1900221)
chr4 (1-189)||(24112426-24112614)
chr4 (1-189)||(34189279-34189467)
chr4 (83-201)||(24460912-24461030)
chr4 (5-201)||(15285235-15285431)
chr4 (1-172)||(19373022-19373193)
chr4 (1-201)||(14664779-14664979)
chr4 (119-159)||(33674162-33674202)
[»] scaffold0124 (1 HSPs)
scaffold0124 (5-201)||(20162-20358)
[»] chr2 (9 HSPs)
chr2 (5-201)||(21703460-21703656)
chr2 (83-201)||(31891624-31891742)
chr2 (83-201)||(3784481-3784599)
chr2 (83-201)||(34156838-34156956)
chr2 (83-200)||(34303600-34303717)
chr2 (83-201)||(16163426-16163544)
chr2 (83-201)||(27118515-27118633)
chr2 (5-201)||(19456717-19456913)
chr2 (62-206)||(27434738-27434882)
[»] chr7 (9 HSPs)
chr7 (5-195)||(16041077-16041267)
chr7 (1-189)||(5159269-5159457)
chr7 (65-193)||(16450199-16450327)
chr7 (83-201)||(31088657-31088775)
chr7 (83-201)||(45733292-45733410)
chr7 (62-206)||(16503571-16503715)
chr7 (62-206)||(16518607-16518751)
chr7 (1-206)||(5127739-5127944)
chr7 (1-189)||(4145331-4145519)
[»] chr5 (9 HSPs)
chr5 (2-191)||(25198788-25198977)
chr5 (62-201)||(22888289-22888428)
chr5 (2-201)||(23891962-23892161)
chr5 (83-201)||(11325634-11325752)
chr5 (83-201)||(13184852-13184970)
chr5 (83-201)||(13440698-13440816)
chr5 (83-201)||(33877087-33877205)
chr5 (1-189)||(33292283-33292471)
chr5 (1-206)||(31431183-31431388)
[»] chr8 (5 HSPs)
chr8 (83-201)||(44562932-44563050)
chr8 (83-201)||(9354453-9354571)
chr8 (83-201)||(19659305-19659423)
chr8 (1-201)||(18710332-18710532)
chr8 (62-206)||(16283256-16283400)
[»] chr3 (11 HSPs)
chr3 (1-189)||(32438864-32439052)
chr3 (83-201)||(17994132-17994250)
chr3 (83-200)||(4625736-4625853)
chr3 (1-189)||(8211448-8211636)
chr3 (64-189)||(4892983-4893108)
chr3 (1-206)||(22871220-22871425)
chr3 (1-206)||(22886279-22886484)
chr3 (5-201)||(16626854-16627049)
chr3 (5-201)||(18530108-18530304)
chr3 (83-201)||(5652179-5652297)
chr3 (1-189)||(5466692-5466880)
[»] chr1 (2 HSPs)
chr1 (5-201)||(20460857-20461053)
chr1 (83-201)||(20340642-20340760)
[»] scaffold2173 (2 HSPs)
scaffold2173 (268-313)||(90-135)
scaffold2173 (176-207)||(1-32)
[»] scaffold0336 (1 HSPs)
scaffold0336 (1-189)||(7978-8166)
[»] scaffold0260 (1 HSPs)
scaffold0260 (83-201)||(2965-3083)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 27630155 - 27629956
Alignment:
Q  8 cacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccaccat 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27630155 cacaagaagaaggaaacagaggttggaatggtatcctcgggagcaggtcagtctacggctactgtcgcccctgttaatgttgctcagctacctccaccat 27630056  T
Q  108 actcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 207  Q
    || ||| | |||| || ||| | ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27630055 acccctgtacaccatattctcagcatccattcttcccaccgttttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 27629956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 27273029 - 27272830
Alignment:
Q  8 cacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccaccat 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||||||    
T  27273029 cacaagaagaaggaaacagaggttggaatggtatcctctggagcaggtcagactacagctactgtcgcccctgttaatgctgctcagctacctccaccat 27272930  T
Q  108 actcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 207  Q
    ||||||||| |||||| ||| ||||||| |||| ||| ||||||||| || | |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27272929 actcctatgtaccgtattctcaacatccattctacccgccattttactattagtatcctttgccatcaggaccacctcaagtacctgtgaatgctattgt 27272830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 20160508 - 20160652
Alignment:
Q  62 atggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaat 161  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||||||||   | |||||  |||||| ||||||| ||||  || |||||||||||||| |    
T  20160508 atggctactgttgcccctgttaatgctactcaattacctccaccatacctgtttgcacattactctcaacatcctttctatccaccattttaccatcagt 20160607  T
Q  162 atcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    ||||| | ||| | || | ||||||||||||||| ||||| ||||    
T  20160608 atcctctaccaccgggtcaacctcaggtacccgttaatgccattg 20160652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 22172323 - 22172179
Alignment:
Q  62 atggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaat 161  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||||||||   | |||||  |||||| ||||||| ||||  || |||||||||||||| |    
T  22172323 atggctactgttgcccctgttaatgctactcaattacctccaccatacctgtttgcacattactctcaacatcctttctatccaccattttaccatcagt 22172224  T
Q  162 atcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    ||||| | ||| | || | ||||||||||||||| ||||| ||||    
T  22172223 atcctctaccaccgggtcaacctcaggtacccgttaatgccattg 22172179  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 28162485 - 28162603
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||| | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||    
T  28162485 aatgctgctcagctacctccatcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggacaac 28162584  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  28162585 ctcaggtacccgttaatgc 28162603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 13522441 - 13522323
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  13522441 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 13522342  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  13522341 ctcaggtacccgttaatgc 13522323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 33374624 - 33374506
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  33374624 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 33374525  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  33374524 ctcaggtacccgttaatgc 33374506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 27629898 - 27629853
Alignment:
Q  268 ttttgctaggcctacttttcctccaatcccggttttgtatgctgat 313  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  27629898 ttttgctaggcctacttttcctccaatcccgatgttgtatgctgat 27629853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4525032 - 4525220
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  || ||||  |||| |||||||||||||| || ||| | ||||| |||||  | |||    
T  4525032 tggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctactgttgcacctatcaatgcagctcaaatgcct 4525131  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  ||||| | |||   ||||| ||| | |||||||||||||| || ||||| ||||| |||||||||||| |||| | |||||||||    
T  4525132 ccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggt 4525220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 29549221 - 29549409
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||||||||||||||| ||||| || || || ||||| ||  || ||||  |||| ||||||||||| || || ||| | ||||| |||||  | |||    
T  29549221 tggacatcacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctaccgttgctcctatcaatgcagctcaaatgcct 29549320  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  ||||| | ||||  ||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  29549321 ccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 29549409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 8892678 - 8892560
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  8892678 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtattctttgccatcgggtcaac 8892579  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  8892578 ctcaggtacccgttaatgc 8892560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 22477674 - 22477521
Alignment:
Q  53 agtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccatttt 152  Q
    ||||| || ||||||||||| |||||  |||||||||| ||  ||||||   | ||| | ||||| | ||||||| | ||||| ||||| || ||||| |    
T  22477674 agtcaatccatggctactgttgccccaattaatgctgcccaattacctctgtcgtacccgtatgcgcagtactctcagcatcccttctttccaccattct 22477575  T
Q  153 accatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    | ||| | |||||||||||||| || | ||||||||||||||| ||||| ||||    
T  22477574 atcattagtatcctttgccatcgggtcaacctcaggtacccgttaatgcaattg 22477521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 8903913 - 8903795
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||  ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  8903913 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatctcttctttccaccattctatcatcagtattctttgccatcgggtcaac 8903814  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  8903813 ctcaggtacccgttaatgc 8903795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 22935218 - 22935125
Alignment:
Q  113 tatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    ||||| ||||| ||| ||||||| ||||| || ||||| || ||||| ||||| |||||| | || | ||||||||||||||| ||||| ||||    
T  22935218 tatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtcaatgcaattg 22935125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 23857663 - 23857570
Alignment:
Q  113 tatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    ||||| ||||| ||| ||||||| ||||| || ||||| || ||||| ||||| |||||| | || | ||||||||||||||| ||||| ||||    
T  23857663 tatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtcaatgcaattg 23857570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 24305071 - 24304871
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  || ||||  |||| || |||||||||||||| ||| | |||||||| ||  | |||    
T  24305071 tggacaccacaagaagaaagaaacggaagtagggatggtgtcagctggagccggtcaatccatggctactgtcgctcctatcaatgctgcccaaatgcct 24304972  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 200  Q
    ||  ||||| | ||||  ||||| ||| | ||||| ||||| || |||||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||    
T  24304971 ccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatg 24304872  T
Q  201 c 201  Q
    |    
T  24304871 c 24304871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 15227638 - 15227835
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| || || ||||||||  |  ||||  |||| || ||||||||||| |||||| |||||||||| ||| |||||||      
T  15227638 catcataagaagaaagaaacagaagtagggatggtatctgccggagctggtcaatccatggctactgttgcccctattaatgctgcccagttacctccgt 15227737  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgct 202  Q
    | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || |||||||||||||||||||| || | ||||||||||||||| ||||||    
T  15227738 cgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcaatatcctttgccatcgggtcaacctcaggtacccgttaatgct 15227835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 1900025 - 1900221
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| || || ||||||||  |  ||||  |||| || ||||||||||| |||||| |||||||||| ||| |||||||      
T  1900025 catcataagaagaaagaaacagaagtagggatggtatctgccggagccggtcaatccatggctactgttgcccctattaatgctgcccagttacctccgt 1900124  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    | ||| | ||||| || |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  1900125 cgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 1900221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 24112426 - 24112614
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||||||||||||||| || || ||||| |||||| || || || || | | ||  || | ||||||||| || ||||| |||||||||||| | ||     
T  24112426 tggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgttgctcctgtcaatgctgctcagtttccc 24112525  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  | ||| | ||||||||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  24112526 ccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 24112614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 34189467 - 34189279
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||||||||||||||| || || ||||| |||||| || || || || | | ||  || | |||||||||||| ||| | |||||||||||| | ||     
T  34189467 tggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgtcgctcctatcaatgctgctcagtttccc 34189368  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  | ||| | ||||||||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  34189367 ccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 34189279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 24461030 - 24460912
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  24461030 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccatcgggtcaac 24460931  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  24460930 ctcaggtacccgttaatgc 24460912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 15285431 - 15285235
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| ||  | ||||||||  |  ||||  |||| || ||||||||||| |||||| |||||||||| ||| ||||||||     
T  15285431 catcataagaagaaagaaacagaagtatggatggtatctgccggagctggtcaatccatggctactgttgcccctattaatgctgcccagttacctccat 15285332  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
      ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||| | ||||| || | ||||||||| ||||| |||||    
T  15285331 tgtacccatatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaacctcaggtgcccgttaatgc 15285235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 19373022 - 19373193
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  || ||||  |||| ||||||||||| || || ||| | ||||| |||||  | |||    
T  19373022 tggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctaccgttgctcctatcaatgcagctcaaatgcct 19373121  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgcca 172  Q
    ||  ||||| | ||||  ||||||||| | |||||||||||||| || ||||| ||||| || |||||||||    
T  19373122 ccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgcca 19373193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 14664779 - 14664979
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  |  ||||  |||| || ||||||||||| || ||| | |||||||| ||  | |||    
T  14664779 tggacaccacaagaagaaagaaacggaagtagggatggtgtctgccggagctggtcaatccatggctactgttgctcctatcaatgctgcccaaatgcct 14664878  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 200  Q
    ||  ||||| | ||||||||||| ||| | ||||| ||||| || |||||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||    
T  14664879 ccgtcatacccatatgcaccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatg 14664978  T
Q  201 c 201  Q
    |    
T  14664979 c 14664979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 33674202 - 33674162
Alignment:
Q  119 ccgtactcttaacatccgttcttccctccattttaccatca 159  Q
    ||||||||| | |||||||||||||| ||||||||||||||    
T  33674202 ccgtactctcagcatccgttcttcccaccattttaccatca 33674162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 20162 - 20358
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| || || ||||||||  |  ||||  |||| || ||||||||||| |||||| |||||||||| ||| |||||||      
T  20162 catcataagaagaaagaaacagaagtagggatggtatctgccggagccggtcaatccatggctactgttgcccctattaatgctgcccagttacctccgt 20261  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    | ||| | ||||| || |||||| | ||||| ||||| ||  |||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  20262 cgtacccatatgcgccatactctcagcatcccttctttccatcattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 20358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 21703656 - 21703460
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| || || ||||||||  |  ||||  |||| || ||||||||||| |||||| ||||||||||  || |||||||      
T  21703656 catcataagaagaaagaaacagaagtagggatggtatctgccggagccggtcaatccatggctactgttgcccctattaatgctgcctagttacctccgt 21703557  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    | ||| | ||||| || |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  21703556 cgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 21703460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 31891742 - 31891624
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||    
T  31891742 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggacaac 31891643  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  31891642 ctcaggtacccgttaatgc 31891624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 3784481 - 3784599
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  3784481 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 3784580  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  3784581 ctcaggtacccgttaatgc 3784599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 34156838 - 34156956
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  34156838 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 34156937  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  34156938 ctcaggtacccgttaatgc 34156956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 34303717 - 34303600
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  34303717 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 34303618  T
Q  183 ctcaggtacccgtgaatg 200  Q
    ||||||||||||| ||||    
T  34303617 ctcaggtacccgttaatg 34303600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 16163426 - 16163544
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  16163426 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccatcgggtcaac 16163525  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  16163526 ctcaggtacccgttaatgc 16163544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 27118515 - 27118633
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| |  |||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  27118515 aatgctgctcagctacctccgtcgtacccgcatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 27118614  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  27118615 ctcaggtacccgttaatgc 27118633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 19456913 - 19456717
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| || || ||||||||  |  ||||  |||| || ||||||||||| |||||| |||||||||| ||| |||||||      
T  19456913 catcataagaagaaagaaacagaagtagggatggtatctgccggagctggtcaatccatggctactgttgcccctattaatgctgcccagttacctccgt 19456814  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    | ||| | ||||| |  |||| | | ||||| ||||| || ||||| || ||||| |||||| | ||||| || | ||||||||| ||||| |||||    
T  19456813 cgtacccatatgcgcaatactttcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaacctcaggtgcccgttaatgc 19456717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 27434882 - 27434738
Alignment:
Q  62 atggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaat 161  Q
    ||||||||||| || ||| |||||||||| ||  | |||||  | ||| | ||||| ||||||||| | ||||| ||||| || ||||| || ||||| |    
T  27434882 atggctactgttgctcctattaatgctgcccaaatgcctccgtcgtacccatatgcgccgtactctcagcatcctttctttccaccattctatcatcagt 27434783  T
Q  162 atcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    | ||||||||| | || | |||||| |||||||| ||||| ||||    
T  27434782 accctttgccaccgggtcaacctcaagtacccgttaatgcaattg 27434738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 16041077 - 16041267
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| || || ||||||||  |  ||||  |||| || ||||||||||| |||||| |||||||||| ||| |||||||      
T  16041077 catcataagaagaaagaaacagaagtagggatggtatctgccggagccggtcaatccatggctactgttgcccctattaatgctgcccagttacctccgt 16041176  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgt 195  Q
    | ||| | ||||| || |||||| | ||||| ||||| || ||||| || ||||| ||||||||| |||| || | |||||||||||||||    
T  16041177 cgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgtcatcgggtcaacctcaggtacccgt 16041267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 5159269 - 5159457
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||||||||||||||| || || ||||| |||||| || || || || | | ||  || ||||||||||| || ||| | |||||||||||| | ||     
T  5159269 tggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccatggctactgttgctcctatcaatgctgctcagtttccc 5159368  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  | ||| | ||||||||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  5159369 ccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 5159457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 16450327 - 16450199
Alignment:
Q  65 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatc 164  Q
    |||||||| |||||| |||||||||| ||| |||||||  | ||| | || || | ||||||| | ||||| ||||| || |||||||| ||||| ||||    
T  16450327 gctactgttgcccctattaatgctgcccagttacctccgtcgtacccgtacgcgcagtactctcagcatcccttctttccaccattttatcatcagtatc 16450228  T
Q  165 ctttgccatcaggaccacctcaggtaccc 193  Q
    |||||||||| || | |||||||||||||    
T  16450227 ctttgccatcgggtcaacctcaggtaccc 16450199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 31088775 - 31088657
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  31088775 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 31088676  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  31088675 ctcaggtacccgttaatgc 31088657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 45733292 - 45733410
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  45733292 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 45733391  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  45733392 ctcaggtacccgttaatgc 45733410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 16503715 - 16503571
Alignment:
Q  62 atggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaat 161  Q
    ||||||||||| || ||| |||||||||| ||  | |||||  ||||| | ||||| ||||||||| | ||||| ||||| || ||||| || ||||| |    
T  16503715 atggctactgttgctcctattaatgctgcccaaatgcctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagt 16503616  T
Q  162 atcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    |||| |||||| | || | ||||||||||||||| ||||| ||||    
T  16503615 atcccttgccaccgggtcaacctcaggtacccgttaatgcaattg 16503571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 16518751 - 16518607
Alignment:
Q  62 atggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaat 161  Q
    ||||||||||| || ||| |||||||||| ||  | |||||  ||||| | ||||| ||||||||| | ||||| ||||| || ||||| || ||||| |    
T  16518751 atggctactgttgctcctattaatgctgcccaaatgcctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagt 16518652  T
Q  162 atcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    |||| |||||| | || | ||||||||||||||| ||||| ||||    
T  16518651 atcccttgccaccgggtcaacctcaggtacccgttaatgcaattg 16518607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5127739 - 5127944
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  || ||||  |||| || ||||||||||| || ||| | ||||| |||||  | |||    
T  5127739 tggacaccacaagaagaaagaaacggaagtagggatggtgtcagctggagccggtcaatccatggctactgttgctcctatcaatgcagctcaaatgcct 5127838  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 200  Q
    ||  ||||| | ||||  ||||| ||| | ||||| ||||| || |||||||| ||||| |||||| ||||| | || | |||||| |||||||| ||||    
T  5127839 ccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtatcctctgccaccgggtcaacctcaagtacccgttaatg 5127938  T
Q  201 ctattg 206  Q
    | ||||    
T  5127939 caattg 5127944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 4145519 - 4145331
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||||||  || ||||  |||| || ||||||||||| || ||| | ||||| |||||  | |||    
T  4145519 tggacaccacaagaagaaagaaactgaagtggggatggtatcagctggagccggtcaatcaatggctactgttgctcctatcaatgcagctcaaatgcct 4145420  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  ||||| | |||   ||||| ||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  4145419 ccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 4145331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 25198788 - 25198977
Alignment:
Q  2 ggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctc 101  Q
    |||||||| ||||||||||||||||| || || ||||||||| |  ||||  |||| || ||||||||||| || ||| |||||||| | ||  | ||||    
T  25198788 ggacatcataagaagaaggaaacagaagtagggatggtatccgccggagccggtcaatccatggctactgttgctcctattaatgcttcccaattgcctc 25198887  T
Q  102 caccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtac 191  Q
    |  | ||| | ||||| ||||||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | |||||||||||    
T  25198888 cgtcgtacccatatgcgccgtactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtac 25198977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 22888289 - 22888428
Alignment:
Q  62 atggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaat 161  Q
    ||||||||||| |||||| |||||||||| ||| |||||||  | ||| | ||||| || |||||| | ||||| ||||| || ||||| || ||||| |    
T  22888289 atggctactgttgcccctattaatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagt 22888388  T
Q  162 atcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    ||||||||||||| || | |||||||||| |||| |||||    
T  22888389 atcctttgccatcgggtcaacctcaggtaaccgttaatgc 22888428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 23891962 - 23892161
Alignment:
Q  2 ggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctc 101  Q
    |||||||| |||||||| |||||||| || || ||||||||  |  ||||   ||| || ||||||||||| || ||| |||||||||| ||  | ||||    
T  23891962 ggacatcataagaagaaagaaacagaagtagggatggtatctgccggagccgatcaatccatggctactgttgctcctattaatgctgcccaaatgcctc 23892061  T
Q  102 caccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    |  | ||| | ||||| ||||||||| | ||||| ||||| ||  |||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  23892062 cgtcgtacccatatgcgccgtactctcagcatcctttctttccaacattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtcaatgc 23892161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 11325634 - 11325752
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||  |||| ||    
T  11325634 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccattgggacaac 11325733  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  11325734 ctcaggtacccgttaatgc 11325752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 13184970 - 13184852
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  13184970 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 13184871  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  13184870 ctcaggtacccgttaatgc 13184852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 13440816 - 13440698
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  13440816 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 13440717  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  13440716 ctcaggtacccgttaatgc 13440698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 33877087 - 33877205
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  33877087 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 33877186  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  33877187 ctcaggtacccgttaatgc 33877205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 33292283 - 33292471
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||||||||||||||| || || ||||| |||||| || || || || | | ||  || | ||||||||| || ||| | |||||||||||| | ||     
T  33292283 tggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgttgctcctatcaatgctgctcagtttccc 33292382  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  | ||| | ||||||||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  33292383 ccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 33292471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 31431183 - 31431388
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||||||  || ||||  |||| ||| |||||||||| || ||| | ||||| |||||  | |||    
T  31431183 tggacaccacaagaagaaagaaacggaagtggggatggtatcagctggagccggtcaatctgtggctactgttgctcctatcaatgcagctcaaatgcct 31431282  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 200  Q
    ||  ||||| | |||   ||||| ||| | |||||||||||||| || ||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||    
T  31431283 ccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatg 31431382  T
Q  201 ctattg 206  Q
    | ||||    
T  31431383 caattg 31431388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 44562932 - 44563050
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||    
T  44562932 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggacaac 44563031  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  44563032 ctcaggtacccgttaatgc 44563050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 9354453 - 9354571
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  9354453 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 9354552  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  9354553 ctcaggtacccgttaatgc 9354571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 19659423 - 19659305
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  19659423 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 19659324  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  19659323 ctcaggtacccgttaatgc 19659305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18710332 - 18710532
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || |||||||| ||  || ||||  |||| || |||||||| || || ||| | ||||| |||||  | |||    
T  18710332 tggacaccacaagaagaaagaaacggaagtgggaatggtgtcagctggagccggtcaatcaatggctaccgttgctcctatcaatgcagctcaaatgcct 18710431  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 200  Q
    ||  ||||| | ||||  ||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | ||||||||| ||||| ||||    
T  18710432 ccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcccgtcaatg 18710531  T
Q  201 c 201  Q
    |    
T  18710532 c 18710532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 16283256 - 16283400
Alignment:
Q  62 atggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaat 161  Q
    ||||||||||| || ||| |||||||||| ||  | |||||  | ||| | ||||| ||||||||| | ||||| ||||| || ||||| || ||| | |    
T  16283256 atggctactgttgctcctattaatgctgcccaaatgcctccgtcgtacccatatgcgccgtactctcagcatcctttctttccgccattctatcattagt 16283355  T
Q  162 atcctttgccatcaggaccacctcaggtacccgtgaatgctattg 206  Q
    ||||||||||| |||| | ||||||||||||| | ||||| ||||    
T  16283356 atcctttgccaccaggtcaacctcaggtacccattaatgcaattg 16283400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 32438864 - 32439052
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||||||||||||||| || || ||||| |||||| || || || || | | ||  || | ||||||||| || ||||| |||||||||||| | ||     
T  32438864 tggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgttgctcctgtcaatgctgctcagtttccc 32438963  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  | ||| | ||||||||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  32438964 ccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 32439052  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 17994250 - 17994132
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  17994250 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 17994151  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  17994150 ctcaggtacccgttaatgc 17994132  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 4625736 - 4625853
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  4625736 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtatcctttgccatcgggtcaac 4625835  T
Q  183 ctcaggtacccgtgaatg 200  Q
    ||||||||||||| ||||    
T  4625836 ctcaggtacccgttaatg 4625853  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 8211448 - 8211636
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  || ||||  |||| || ||||||||||| || ||| | ||||| |||||  | |||    
T  8211448 tggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatccatggctactgttgctcctatcaatgcagctcaaatgcct 8211547  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  ||||| | ||||| ||||||||| | |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  8211548 ccgtcatacccatatgcgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 8211636  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 4892983 - 4893108
Alignment:
Q  64 ggctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatat 163  Q
    ||||||||| || ||| | |||||||||||| | || ||  | ||| | ||||||||||||||| | |||||||||||||| || ||||| ||||| ||     
T  4892983 ggctactgttgctcctatcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtac 4893082  T
Q  164 cctttgccatcaggaccacctcaggt 189  Q
    ||||||||| | || | |||||||||    
T  4893083 cctttgccaccgggccaacctcaggt 4893108  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 22871425 - 22871220
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  || ||||  |||| |||||||||||||| || ||| | ||||| |||||| | |||    
T  22871425 tggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctactgttgcacctatcaatgcagctcagatgcct 22871326  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 200  Q
    ||  ||||| | |||   ||||| ||| | |||||||||||||| || ||||| ||||| || ||||||||| |||| |  ||||| || ||||| ||||    
T  22871325 ccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccaggccagcctcaagtgcccgtcaatg 22871226  T
Q  201 ctattg 206  Q
    | ||||    
T  22871225 caattg 22871220  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 22886484 - 22886279
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  || ||||  |||| |||||||||||||| || ||| | ||||| |||||| | |||    
T  22886484 tggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctactgttgcacctatcaatgcagctcagatgcct 22886385  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 200  Q
    ||  ||||| | |||   ||||| ||| | |||||||||||||| || ||||| ||||| || ||||||||| |||| |  ||||| || ||||| ||||    
T  22886384 ccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccaggccagcctcaagtgcccgtcaatg 22886285  T
Q  201 ctattg 206  Q
    | ||||    
T  22886284 caattg 22886279  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 16627049 - 16626854
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| ||||||||| ||||||| || || ||||||||  |  ||||  |||| || ||||||||||| |||||| |||||||||| ||| |||||||      
T  16627049 catcataagaagaag-aaacagaagtagggatggtatctgccggagccggtcaatccatggctactgttgcccctattaatgctgcccagttacctccgt 16626951  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    | ||| | |||||||  |||||| | ||||| ||||| || || || || ||||| |||||| | ||||| || | ||||| ||||||||| |||||    
T  16626950 cgtacccgtatgcacaatactctcagcatcccttctttccaccgttctatcatcagtatcctctaccatcgggtcaacctccggtacccgttaatgc 16626854  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 18530108 - 18530304
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||||||| || || ||||||||  |  || | ||||| || |||||||||||  ||||| |||||||||| ||| ||||||||     
T  18530108 catcataagaagaaagaaacagaagtagggatggtatctgccggaactagtcaatccatggctactgttacccctattaatgctgcccagttacctccat 18530207  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||||| | ||||| || | |||||| || ||||| |||||    
T  18530208 cgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaacctcaagtgcccgttaatgc 18530304  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 5652179 - 5652297
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || ||||| |||| ||||| ||| || | ||    
T  5652179 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcgtttgcaatcgggtcaac 5652278  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  5652279 ctcaggtacccgttaatgc 5652297  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 5466692 - 5466880
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||| ||  |  ||||  |||| |||||||||||||| || ||| | ||||| |||||  | |||    
T  5466692 tggacaccacaagaagaaagaaacggaagtggggatggtgtcagccggagccggtcaatctatggctactgttgcacctatcaatgcagctcaaatgcct 5466791  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  ||||| | |||   ||||| ||| | |||||||||||||| |||||||| ||||| || ||||||||| | || | |||||||||    
T  5466792 ccgtcatacccatatatgccgtattctcagcatccgttcttcccaccattttatcatcagtaccctttgccacccggccaacctcaggt 5466880  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 20460857 - 20461053
Alignment:
Q  5 catcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacctccac 104  Q
    ||||| |||||||| |||| ||| || || ||||||||  |  ||||  |||| || ||||||||| | |||||| |||||||||| ||| ||||||| |    
T  20460857 catcataagaagaaagaaatagaagtagggatggtatctgccggagccggtcaatccatggctactattgcccctattaatgctgcccagttacctccgc 20460956  T
Q  105 catactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 201  Q
    | ||| | ||||| |  |||||| | ||||| ||||| || ||||| || |||||||||||| | ||||| || | ||||||||||||||| |||||    
T  20460957 cgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcaatatcctctaccatcgggtcaacctcaggtacccgttaatgc 20461053  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 20340760 - 20340642
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | || || |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  20340760 aatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 20340661  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  20340660 ctcaggtacccgtcaatgc 20340642  T

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Target: scaffold2173 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold2173
Description:

Target: scaffold2173; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 90 - 135
Alignment:
Q  268 ttttgctaggcctacttttcctccaatcccggttttgtatgctgat 313  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  90 ttttgctaggcctacttttcctccaatcccgatgttgtatgctgat 135  T

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Target: scaffold2173; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 207
Target Start/End: Original strand, 1 - 32
Alignment:
Q  176 ggaccacctcaggtacccgtgaatgctattgt 207  Q
    ||||||||||||||||||||||||||||||||    
T  1 ggaccacctcaggtacccgtgaatgctattgt 32  T

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Target: scaffold0336 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 7978 - 8166
Alignment:
Q  1 tggacatcacaagaagaaggaaacagaggttggaatggtatcctctagagcaagtcagtctatggctactgtcgcccctgttaatgctgctcagctacct 100  Q
    |||||| ||||||||||| ||||| || || || ||||||||  || ||||  |||| ||| |||||||||| || ||| | ||||| |||||  | |||    
T  7978 tggacaccacaagaagaaagaaacggaagtggggatggtatcagctggagccggtcaatctgtggctactgttgctcctatcaatgcagctcaaatgcct 8077  T
Q  101 ccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccacctcaggt 189  Q
    ||  ||||| | |||   ||||| ||| | |||||||||||||| || ||||| ||||| |||||||||||| |||| | |||||||||    
T  8078 ccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggt 8166  T

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Target: scaffold0260 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 3083 - 2965
Alignment:
Q  83 aatgctgctcagctacctccaccatactcctatgcaccgtactcttaacatccgttcttccctccattttaccatcaatatcctttgccatcaggaccac 182  Q
    ||||||||||||||||||||  | ||| | || || |  |||||| | ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  3083 aatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 2984  T
Q  183 ctcaggtacccgtgaatgc 201  Q
    ||||||||||||| |||||    
T  2983 ctcaggtacccgtcaatgc 2965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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