View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12720_low_7 (Length: 286)
Name: NF12720_low_7
Description: NF12720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12720_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 17734662 - 17734406
Alignment:
| Q |
17 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17734662 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
17734563 |
T |
|
| Q |
117 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
17734562 |
cggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgtt |
17734463 |
T |
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| Q |
217 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgctctgatgt |
273 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17734462 |
cagagaaacgttggtgaggtttgtcagtgattttccgatgagattctgctctgatgt |
17734406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 17743902 - 17743656
Alignment:
| Q |
17 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
116 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17743902 |
agcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
17743803 |
T |
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| Q |
117 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
17743802 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgtt |
17743703 |
T |
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| Q |
217 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattct |
263 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
17743702 |
cagagaaacgttggtgaatttggtgagtgattttccgatgagattct |
17743656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 16720678 - 16720430
Alignment:
| Q |
17 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||| |
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| T |
16720678 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagc |
16720579 |
T |
|
| Q |
117 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
216 |
Q |
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|||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||| |
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| T |
16720578 |
cggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgtt |
16720479 |
T |
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| Q |
217 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
265 |
Q |
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|| |||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
16720478 |
catggaaatgttggttaggtttgtaaatgattttccgatgagattctgc |
16720430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 17697692 - 17697444
Alignment:
| Q |
17 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||| |
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| T |
17697692 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagc |
17697593 |
T |
|
| Q |
117 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
216 |
Q |
| |
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|||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||| |
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| T |
17697592 |
cggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgtt |
17697493 |
T |
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| Q |
217 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
265 |
Q |
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|| |||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
17697492 |
catggaaatgttggttaggtttgtaaatgattttccgatgagattctgc |
17697444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 17716611 - 17716363
Alignment:
| Q |
17 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
116 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||||| | |||||||||||||| |
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| T |
17716611 |
agcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggagc |
17716512 |
T |
|
| Q |
117 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
216 |
Q |
| |
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|||||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||| |
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| T |
17716511 |
cggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgtt |
17716412 |
T |
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| Q |
217 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
265 |
Q |
| |
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|| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
17716411 |
catggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 16729551 - 16729303
Alignment:
| Q |
17 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
116 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| |
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| T |
16729551 |
agcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagc |
16729452 |
T |
|
| Q |
117 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
216 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||| |
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| T |
16729451 |
tggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgtt |
16729352 |
T |
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| Q |
217 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
265 |
Q |
| |
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|| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
16729351 |
catggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
16729303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 17706623 - 17706375
Alignment:
| Q |
17 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
116 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| |
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| T |
17706623 |
agcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagc |
17706524 |
T |
|
| Q |
117 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
216 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||| |
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| T |
17706523 |
tggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgtt |
17706424 |
T |
|
| Q |
217 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
265 |
Q |
| |
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|| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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|
| T |
17706423 |
catggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17706375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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