View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12720_low_8 (Length: 259)
Name: NF12720_low_8
Description: NF12720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12720_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 47711964 - 47711712
Alignment:
| Q |
1 |
catattcaaatgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47711964 |
catattcaaatgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacaggcatcaaaaaagacattgtcatcttcatctgtttcttc |
47711865 |
T |
|
| Q |
101 |
ctctgcccaatcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaatagaaatatagtcatctctgataactaagccagcc |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47711864 |
ctctgccacatcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaatagaaatatagtcatctctgataactaagccagcc |
47711765 |
T |
|
| Q |
201 |
cctagaagagcaatagaagtaatgaccatgatcaaaattgatgtccatctcat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
47711764 |
cctagaagagcaatagaagtaatgaccatgatcaaaattggtgtccatttcat |
47711712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 32885582 - 32885453
Alignment:
| Q |
42 |
cttgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcac |
141 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32885582 |
cttgatgatagaatatcacgggtatcaaaaaagacattgtcatcgtcatctgtttcttcctctgccacatcatttctctcattatcatcctcagattcac |
32885483 |
T |
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| Q |
142 |
ttgcacttccttctgaattaaaaatagaaa |
171 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
32885482 |
ttgcacttccttctgaattaaaaatagaaa |
32885453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 32885650 - 32885611
Alignment:
| Q |
4 |
attcaaatgcatcattatcagatgagaaagatgaaactct |
43 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
32885650 |
attcaaatgcatcattatcagatgagaaagatgatactct |
32885611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 45603803 - 45603720
Alignment:
| Q |
170 |
aatatagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattgatgtccatctcat |
253 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
45603803 |
aatatagtcatctgtgaggactaaaccagcccctagaagagcaatagatgtaatgaccatgatcaaaattggtgtccatttcat |
45603720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 24481296 - 24481169
Alignment:
| Q |
44 |
tgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcactt |
143 |
Q |
| |
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|||||||| || |||||||| ||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24481296 |
tgatgatataaaatcacgggtgtcaaaaaagggggtatcatcatcatctgtttcttcctctgctgcatcatttctctcattatcatcctcagacccactt |
24481197 |
T |
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| Q |
144 |
gcacttccttctgaattaaaaatagaaa |
171 |
Q |
| |
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||||| | |||| ||||||||| |||| |
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|
| T |
24481196 |
gcactaacctctggattaaaaattgaaa |
24481169 |
T |
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