View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_high_10 (Length: 384)
Name: NF12721_high_10
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 35970339 - 35969995
Alignment:
| Q |
18 |
ggagtgtcgtgtctataacgtcatgcacatttcatttggtagattcagtaacaacttaatgtttgtttacgtaataataatagagcctcactggttgacc |
117 |
Q |
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| T |
35970339 |
ggagtgtcgtgtctataacgtcatgcacatttcatttggtagattcagtaacaacttaatgtttgtttacgtaataataatagagcctcactggttgacc |
35970240 |
T |
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| Q |
118 |
agtttccttgtgtaaaattgtgatttaattgaaccaattgaaaacaagtaaaagattggtgacgtacaagtttgcactgaagataaggtttcgagtttgg |
217 |
Q |
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| T |
35970239 |
agattccttgtgtaaaattgtggtttaattgaaccaattgaaaacaagtaaaagattggtgacgt---agtttgcactgaagataaggtttggagtttgg |
35970143 |
T |
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| Q |
218 |
acggctattttacagtaatactacttgtatactagt-atatcatttgatttagttgagttgtttgagagaaatatctaactaaagttttgacgttaattt |
316 |
Q |
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| T |
35970142 |
acggctatttt------ataatacttgtatactagtaatatcatttga-ctagttgagttgtttgagagaaatatctaaccaaagttttgacgttaattt |
35970050 |
T |
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| Q |
317 |
gaaaatatcgtcactgaatttcagtggaaataaaaatcatactcgtgatcagtga |
371 |
Q |
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| T |
35970049 |
gaaaatatcgtcactgaatttcagtggaaataaaaatcatactcgtgatcagtga |
35969995 |
T |
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