View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12721_high_12 (Length: 360)

Name: NF12721_high_12
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12721_high_12
NF12721_high_12
[»] chr6 (2 HSPs)
chr6 (1-346)||(10068942-10069287)
chr6 (5-268)||(10106704-10106970)
[»] chr7 (1 HSPs)
chr7 (5-71)||(33252908-33252974)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 10068942 - 10069287
Alignment:
Q  1 tattgttgggacaaagagagtagtagcatctgatgttggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10068942 tattgttgggacaaagagagtagtagcatctgatgttggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactacc 10069041  T
Q  101 accatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  10069042 agcatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcaaggaaagaaatcgagagaagtg 10069141  T
Q  201 gttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttgcaatagaggatgaaaataaaataaagcaaatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10069142 gttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgcgactttatatagttgcaatagaggatgaaaataaaataaagcaaatt 10069241  T
Q  301 tttgggattatttaatttctgatggccagcctgcctcaacttattg 346  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  10069242 tttgggattatttaatttttgatggccagcctgcctcaacttattg 10069287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 10106704 - 10106970
Alignment:
Q  5 gttgggacaaagagagtagtagcatctgatgttggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactacaacca 104  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  10106704 gttggaacaaagagagtagtagcatctgatgtaggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatgaccactaccacca 10106803  T
Q  105 tagcaaaaaattgcttcatcttcaatgcttccatttct---gaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtgg 201  Q
    ||||||||| ||| |||||||||||||| |||||||||    ||||    |||||||||||| |||||||||||  |||||||||||  ||||  | |||    
T  10106804 tagcaaaaatttgattcatcttcaatgcctccatttctataaaaaaaaaacttggaaattttctttcttttcttttgaggaaagaaagtgagaggaatgg 10106903  T
Q  202 ttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg 268  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10106904 gtaggcaaatacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg 10106970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 33252974 - 33252908
Alignment:
Q  5 gttgggacaaagagagtagtagcatctgatgttggacttggagctggtgcatctgcagctgaaacac 71  Q
    ||||| ||||| || || |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  33252974 gttggaacaaaaagtgtggtagcatcagaagttggacttggagctggtgcatcagcagctgaaacac 33252908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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