View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_high_15 (Length: 321)
Name: NF12721_high_15
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 33359087 - 33359311
Alignment:
| Q |
18 |
aatggacacttttagaaaaattacagtatgtgaggaactttatcttctccacattcttccgttgcattttttattcgggtttcggtgttgtggtgtattt |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33359087 |
aatggacacttttagaaaaattacagcatgtgaggaactttatcttctccacattcttccgttgcattttttattcgggtttcggtgttgtggtgtattt |
33359186 |
T |
|
| Q |
118 |
tatttagtagccgtatttgtatggcagcggctgtatcttatgagaaaggtagcaggtttgtttttgaatagtacgtgtgatagttgttaaacttgtaagg |
217 |
Q |
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|||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
33359187 |
tatttagtagtcatatttgtatggcagcggttgtatcttatgagaaaggtagcagtcttgtttttgaatagtacgtgagatagttgttaaacttgcaagg |
33359286 |
T |
|
| Q |
218 |
acactttaggatttttcaaaaaagg |
242 |
Q |
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|| ||||||||||||||||||||| |
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| T |
33359287 |
gcaatttaggatttttcaaaaaagg |
33359311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 41474873 - 41474648
Alignment:
| Q |
18 |
aatggacacttttagaaaaattacagtatgtgaggaactttatcttctccacattcttccgttgcattttttattcgggtttcggtgttgtggtgtattt |
117 |
Q |
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||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |
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| T |
41474873 |
aatggacccttttagaaaaattacagcat-tgaggaactttatcttctccacattcttccgttgcattttttattctggtatcggtgttgtggtgtatct |
41474775 |
T |
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| Q |
118 |
tatttagtagccgtatttgtatggcagcggctgtatcttatgagaaaggtagcaggtttg-tttttgaatag-tacgtgtgatagttgttaaacttgtaa |
215 |
Q |
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| T |
41474774 |
tatttagtagctgtatttgtatggtaggggttgtatcttatgagaaaggtagcagttttgttttttgaatagttacgtgagatagttattaaacttgtaa |
41474675 |
T |
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| Q |
216 |
ggacactttaggatttttcaaaaaagg |
242 |
Q |
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|| || |||| ||||||| ||||||| |
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| T |
41474674 |
gggcaatttatgatttttttaaaaagg |
41474648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 48117664 - 48117520
Alignment:
| Q |
18 |
aatggacacttttagaaaaattacagtatgtgaggaactttatcttctccacattcttccgttgcattttttattcgggtttcggtgttgtggtgtattt |
117 |
Q |
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||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||| | |
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| T |
48117664 |
aatggacccttttagaaaaattagagcatgtgaggaactttatcttctccacattcttttgttgcattttttattctggtatc-gtgttgtggtgtatct |
48117566 |
T |
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| Q |
118 |
tatttagtagccgtatttgtatggcagcggctgtatcttatgagaa |
163 |
Q |
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| T |
48117565 |
tatttagtagccgtatttgtatggtaggggttgtatcttatgagaa |
48117520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 48117348 - 48117266
Alignment:
| Q |
153 |
tcttatgagaaaggtagcaggtttg-tttttgaatag-tacgtgtgatagttgttaaacttgtaaggacactttaggattttt |
233 |
Q |
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|||||||||||||||||||| |||| ||||||||||| || ||| ||||||| |||||||||||||| | |||||||||||| |
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| T |
48117348 |
tcttatgagaaaggtagcagttttgttttttgaatagttatgtgagatagttattaaacttgtaagggcgatttaggattttt |
48117266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 10209367 - 10209505
Alignment:
| Q |
18 |
aatggacacttttagaaaaattacagtatgtgaggaactttatcttctccacattcttccgttgcattttttattcgggtttcggtgttgtggtgtattt |
117 |
Q |
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||||||| ||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| | |
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| T |
10209367 |
aatggacctttttaaaaaaattacagcatgttaggaacttcatcttctccacattcttccgttgcattttttattcttatatcggttttgtggtgtatct |
10209466 |
T |
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| Q |
118 |
tatttagtagccgtatttgtatggcagcggctgtatctt |
156 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
10209467 |
tatttagtagccgtatttgtatggcagcggttgtatctt |
10209505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 10209854 - 10209940
Alignment:
| Q |
157 |
atgagaaaggtagcaggtttgtttttgaatag-tacgtgtgatagttgttaaacttgtaaggacactttaggatttttcaaaaaagg |
242 |
Q |
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|||||||||||||||| ||||||||||||||| |||||| |||||| ||||| |||||||| || |||||||||||| |||||||| |
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| T |
10209854 |
atgagaaaggtagcagttttgtttttgaatagttacgtgacatagttattaaatttgtaagggcaatttaggattttttaaaaaagg |
10209940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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