View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_high_16 (Length: 317)
Name: NF12721_high_16
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_high_16 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 153 - 309
Target Start/End: Original strand, 29312496 - 29312652
Alignment:
| Q |
153 |
cactgatcctatctgagcatgtctaactcaaatttcattagactgtcggtgactctcgtgtgtacgaactcacttgcccgactctctcccacttgcttga |
252 |
Q |
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| T |
29312496 |
cactgatcctatctgagcatgtctaactcaaatttcattagactgtcggtgactctcgtgtgtacgaactcacttgcccgactctctcccacttgcttga |
29312595 |
T |
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| Q |
253 |
gcatctctctatgaaccctctctttgattgtgttctttattctctcaaattcatctc |
309 |
Q |
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| T |
29312596 |
gcatctctctatgaaccctctctttgattgtgttctttattctctcaaattcatctc |
29312652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 29312389 - 29312495
Alignment:
| Q |
18 |
agtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtg |
117 |
Q |
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| T |
29312389 |
agtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtg |
29312488 |
T |
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| Q |
118 |
aatattt |
124 |
Q |
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||||||| |
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| T |
29312489 |
aatattt |
29312495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 29054639 - 29054467
Alignment:
| Q |
18 |
agtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtg |
117 |
Q |
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| T |
29054639 |
agtatatgtctaaagttgtttgtgtgattattactgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtg |
29054540 |
T |
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| Q |
118 |
aatatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcat |
190 |
Q |
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| T |
29054539 |
attatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaatttcat |
29054467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 34635477 - 34635297
Alignment:
| Q |
18 |
agtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtg |
117 |
Q |
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| T |
34635477 |
agtatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtg |
34635378 |
T |
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| Q |
118 |
aatatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
198 |
Q |
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| T |
34635377 |
actatttgactaagattattgggaataaggggtcacaatgatcctatctgagcctttccaactcaaattttattagactgt |
34635297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 4437 - 4617
Alignment:
| Q |
18 |
agtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtg |
117 |
Q |
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|||||||| ||||||||||| ||||| |||||||| || ||| |||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
4437 |
agtatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtg |
4536 |
T |
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| Q |
118 |
aatatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
198 |
Q |
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| T |
4537 |
actatttgactaagattattgggaataaggggtcacaatgatcctatctgagcctttccaactcaaattttattagactgt |
4617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 28743874 - 28744054
Alignment:
| Q |
18 |
agtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtg |
117 |
Q |
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||||||||||||||||||| | || || |||||||| || ||| ||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
28743874 |
agtatatgtctaaggttgtcggtgttataattgttgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagacttatggtg |
28743973 |
T |
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| Q |
118 |
aatatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
198 |
Q |
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| T |
28743974 |
attatttgaatcagattattgggattaagtggtgacgataatcctatctgagtttgtctaactcaaatttgattagactgt |
28744054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 13792368 - 13792255
Alignment:
| Q |
18 |
agtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtg |
117 |
Q |
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|||||||||| || |||||| | |||| ||||| || || ||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
13792368 |
agtatatgtccaatgttgttggtgtgacgattgtcgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagatttttggtg |
13792269 |
T |
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| Q |
118 |
aatatttgactcag |
131 |
Q |
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| T |
13792268 |
attatttgactcag |
13792255 |
T |
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