View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_high_3 (Length: 559)
Name: NF12721_high_3
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Original strand, 38483942 - 38484469
Alignment:
| Q |
16 |
gttgtttttacgtggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagtta |
115 |
Q |
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| T |
38483942 |
gttgtttttacatggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagtta |
38484041 |
T |
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| Q |
116 |
ggatggtgctgaaaagtatcgttgctgcagggtgggtcgttgttttttcttacttttatacgaagacatggaagcagagaaaccacgacaaagaatggtc |
215 |
Q |
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| T |
38484042 |
ggatggtgctgaaaagtatcgttgctgcagggtgggtcgttgttttttcttacttttatacgaagacatggaagcagagaaaccacgacaaagaatggtc |
38484141 |
T |
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| Q |
216 |
tgttgaagctaataagaggttgataatttttcttaaagtttgttttctttttgttattccggagcttattgctttggcactttttatactaccttggatt |
315 |
Q |
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| T |
38484142 |
tgttgaagctaataagaggttgatagtttttcttaaagtttgttttctttttgttattccggagcttattgctttggcactttttatactaccttggatt |
38484241 |
T |
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| Q |
316 |
agaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggtttcagaggagaatttatgttggtcgtggattgagacaaggtcttg |
415 |
Q |
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| T |
38484242 |
agaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggtttcagaggagaatttacgttggtcgtggattgagacaaggtcttg |
38484341 |
T |
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| Q |
416 |
tagatagtgttaagtatactttgttttgggttgtggtgttggtttcaaaatttagtttcagttactttttacagattaaacctatgattgctccatcaag |
515 |
Q |
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| T |
38484342 |
tagatagtgttaaatatactttgttttgggttgtggtgttggtttcaaaatttagtttcagttactttttacagattaaacctatgattgctccatcaag |
38484441 |
T |
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| Q |
516 |
agcagtattggatcttaaggatattgat |
543 |
Q |
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| T |
38484442 |
agcagtattggatcttaaggatattgat |
38484469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 30118347 - 30118468
Alignment:
| Q |
22 |
tttacgtggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagttaggatgg |
121 |
Q |
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| T |
30118347 |
tttacatggagtggtatgaggtttttgcagtctttgcttgatgtgggcatgcagtataggttggtatcgagggagacaaagatgcttggagtgaggatgt |
30118446 |
T |
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| Q |
122 |
tgctgaaaagtatcgttgctgc |
143 |
Q |
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| T |
30118447 |
ttctgaaatgtattgttgctgc |
30118468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 527
Target Start/End: Original strand, 30118596 - 30118852
Alignment:
| Q |
271 |
attccggagcttattgctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggt |
370 |
Q |
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| T |
30118596 |
attccggaggttctggctttagccctgtttatacttccttggattagaaactttgtggagaatacaaactggaggatcttttacatgctgtcgtggtggt |
30118695 |
T |
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| Q |
371 |
ttcagaggagaatttatgttggtcgtggattgagacaaggtcttgtagatagtgttaagtatactttgttttgggttgtggtgttggtttcaaaatttag |
470 |
Q |
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| T |
30118696 |
ttcagagcagaagctttgttggtcggggtttgagagaagggctttatgacaacattaagtattcattgttctgggttttcgtgctggcaacaaaattttg |
30118795 |
T |
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| Q |
471 |
tttcagttactttttacagattaaacctatgattgctccatcaagagcagtattgga |
527 |
Q |
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| T |
30118796 |
ctttagttactttttgcaggtcaaacccatgattgccccaacaaaggcagtgttgga |
30118852 |
T |
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