View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_high_31 (Length: 238)
Name: NF12721_high_31
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 8100673 - 8100822
Alignment:
| Q |
50 |
aacacaggatgccctcgcgaggccattgatagcttggagaaaaacccaattaatacaagggctcttgaggatctgctgctcgtggaaccagcaccgtcat |
149 |
Q |
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| T |
8100673 |
aacacaggatgccctcgcgaggccattgatagcttggagaaaaacccaattaatacaagggctcttgaggatctgctgctcgtggaaccagcaccgtcat |
8100772 |
T |
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| Q |
150 |
tcttcatgataatcgatgacatagatgaaggattctgcatgaagcatatc |
199 |
Q |
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| T |
8100773 |
tcttcatgataatcgatgacatagatgaaggattctgcatgaagcatatc |
8100822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 8106403 - 8106507
Alignment:
| Q |
95 |
ccaattaatacaagggctcttgaggatctgctgctcgtggaaccagcaccgtcattcttcatgataatcgatgacatagatgaaggattctgcatgaagc |
194 |
Q |
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| T |
8106403 |
ccaattaatgctagggctctaaaggatctgttgctcgtagaaccagcaccatcaatcttcgtgattatcgatgacatagatgaaggattctgcaggaagc |
8106502 |
T |
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| Q |
195 |
atatc |
199 |
Q |
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| T |
8106503 |
atatc |
8106507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 8095740 - 8095835
Alignment:
| Q |
95 |
ccaattaatacaagggctcttgaggatctgctgctcgtggaaccagcaccgtcattcttcatgataatcgatgacatagatgaa--ggattctgca |
188 |
Q |
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| T |
8095740 |
ccaattaatgcaggggctcttacggatctgctgctcgtggaaccagtaccatcattcttcgtgataatcgatgacatagatgaattggattctgca |
8095835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 8095648 - 8095697
Alignment:
| Q |
34 |
catgatcatatatatgaacacaggatgccctcgcgaggccattgatagct |
83 |
Q |
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| T |
8095648 |
catgatcatatatatgaacaaaggatgccctcgtgagaccattgatagct |
8095697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8100642 - 8100676
Alignment:
| Q |
1 |
cgataatgttagcagaggatgactaccacgaaaca |
35 |
Q |
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| T |
8100642 |
cgataatgttagcagaggatgactaccacgaaaca |
8100676 |
T |
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