View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_high_32 (Length: 230)
Name: NF12721_high_32
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 20960101 - 20959944
Alignment:
| Q |
55 |
aacaaacaatataatagtttcaaggatcagcactaaaaagttacaaccaaaactagttatgaaaacctaagctacgagcaagcctttaaggaacactaag |
154 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960101 |
aacaaacaacataaaagtttcaaggatcagcactaaaaagttacaaccaaaactagttatgaaaacctaagctacgagcaagcctttaaggaacactaag |
20960002 |
T |
|
| Q |
155 |
ctagagaaagaaaccaatgaaatcacaaaccaatgcacaagacagccacctgcccaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960001 |
ctagagaaagaaaccaatgaaatcacaaaccaatgcacaagacagccacctgcccaag |
20959944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 21006180 - 21006135
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagcc |
54 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
21006180 |
agtgagaagaaaaaataagttaagggacctgcgtatgtattaagcc |
21006135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 21011884 - 21011929
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagcc |
54 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
21011884 |
agtgagaagaaaaaataagttaagggacctgcgtatgtattaagcc |
21011929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 3180258 - 3180363
Alignment:
| Q |
65 |
ataatagtttcaaggatcagcactaaaaagttacaaccaaaactagttatgaaaacctaagctacgagcaagcctttaaggaacactaagctagagaaag |
164 |
Q |
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|||| |||||||||||||| |||||| ||||||||| |||||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
3180258 |
ataaaagtttcaaggatcaacactaa---gttacaacctaaactagttatggaaaccaaagctaccagcaagccttcaaggaacactaagctagagaaag |
3180354 |
T |
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| Q |
165 |
aaaccaatg |
173 |
Q |
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|||||||| |
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| T |
3180355 |
caaccaatg |
3180363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 24750107 - 24750158
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagccaacaaa |
60 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
24750107 |
agtgagaagaaaaaataagttaagggacttgcgtatgcattaagccaacaaa |
24750158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 24744434 - 24744388
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagcca |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
24744434 |
agtgagaagaaaaaataagttaagggacctccgtatgcattaagcca |
24744388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 43579720 - 43579675
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagcc |
54 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||| |||||||| |
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|
| T |
43579720 |
agtgagaagaaaaaataagttaagagacttgcgtatgtattaagcc |
43579675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 43583590 - 43583635
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagcc |
54 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| |||| |||||||| |
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|
| T |
43583590 |
agtgagaagaaaaaataaattaagggacatgcgtatgtattaagcc |
43583635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 26452309 - 26452354
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagcc |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
26452309 |
agtgagaagaaaaaataagttaagggacctgcgtatgcattaagcc |
26452354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 26446545 - 26446499
Alignment:
| Q |
9 |
agtgagaagaaaaaataagttaagggacctgcttatgcattaagcca |
55 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
26446545 |
agtgagaagaaaaaataagttaagggacatgcgtatgcattaagcca |
26446499 |
T |
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