View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12721_low_11 (Length: 376)

Name: NF12721_low_11
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12721_low_11
NF12721_low_11
[»] chr6 (2 HSPs)
chr6 (111-363)||(26451657-26451909)
chr6 (163-317)||(11388222-11388376)
[»] chr8 (4 HSPs)
chr8 (111-363)||(24744834-24745086)
chr8 (111-363)||(43582936-43583188)
chr8 (161-296)||(24703690-24703825)
chr8 (161-296)||(7562291-7562426)
[»] chr5 (3 HSPs)
chr5 (111-363)||(21006580-21006832)
chr5 (163-317)||(21790958-21791112)
chr5 (161-296)||(32412446-32412581)
[»] scaffold0630 (1 HSPs)
scaffold0630 (163-295)||(2525-2657)
[»] chr4 (2 HSPs)
chr4 (161-282)||(8516293-8516414)
chr4 (118-181)||(8516229-8516292)
[»] chr2 (6 HSPs)
chr2 (161-342)||(43018715-43018896)
chr2 (161-296)||(27657246-27657381)
chr2 (163-340)||(15808544-15808721)
chr2 (163-296)||(38800701-38800834)
chr2 (163-342)||(20948867-20949046)
chr2 (165-296)||(21541545-21541676)
[»] chr1 (1 HSPs)
chr1 (111-196)||(5944429-5944514)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 111 - 363
Target Start/End: Original strand, 26451657 - 26451909
Alignment:
Q  111 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcttcacca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26451657 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcttcacca 26451756  T
Q  211 accaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgcaaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccg 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26451757 accaacttaaagtagctgcaacctttatcataagcattcctgtagttgttgcaaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccg 26451856  T
Q  311 ttcgaactacagttggttctccacacctacaactcggatttccccttcttctc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26451857 ttcgaactacagttggttctccacacctacaactcggatttccccttcttctc 26451909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 11388222 - 11388376
Alignment:
Q  163 tgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgc 262  Q
    ||||||||||||||||| || |||||||| |||| |||||||||| |||| ||||||||||| ||||| |||||||||   | ||| || ||||| || |    
T  11388222 tgtttttcaatcttcaaatctctttcatccataacatcatcttcatcaactaacttaaagtaactgcatcctttgtcaatcgaatttctatagtttctac 11388321  T
Q  263 aaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccgttcgaac 317  Q
    | |||||||||||||||||| | || |||||||| || ||||| || ||||||||    
T  11388322 agccccaaaatttcttcccacaatttggattcaatgaatcagttacagttcgaac 11388376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 111 - 363
Target Start/End: Complemental strand, 24745086 - 24744834
Alignment:
Q  111 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcttcacca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24745086 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcttcacca 24744987  T
Q  211 accaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgcaaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccg 310  Q
    || ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24744986 acaaacttaaagtagctgcaacctttatcataagcattcatgtagttgatgcaaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccg 24744887  T
Q  311 ttcgaactacagttggttctccacacctacaactcggatttccccttcttctc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24744886 ttcgaactacagttggttctccacacctacaactcggatttccccttcttctc 24744834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 111 - 363
Target Start/End: Original strand, 43582936 - 43583188
Alignment:
Q  111 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcttcacca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43582936 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcgtcacca 43583035  T
Q  211 accaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgcaaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || |    
T  43583036 accaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgcaaccccaaaatttcttcccatagttatgattcaaaaagtcagtcactg 43583135  T
Q  311 ttcgaactacagttggttctccacacctacaactcggatttccccttcttctc 363  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43583136 tttgaactacagttggttctccacacctacaactcggatttccccttcttctc 43583188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 24703825 - 24703690
Alignment:
Q  161 tctgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgct 260  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||| |||| ||| ||||||| ||||| |||||||||   | |||  | ||||| ||    
T  24703825 tctgtttttcaatcttcaaatccctttcatccataacatcatcttcatcaactaacctaaagtaactgcatcctttgtcacttgaatttttatagtttct 24703726  T
Q  261 gcaaccccaaaatttcttcccatagttaggattcaa 296  Q
     ||||||||||||||||||||| | || ||||||||    
T  24703725 acaaccccaaaatttcttcccacaatttggattcaa 24703690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 7562426 - 7562291
Alignment:
Q  161 tctgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgct 260  Q
    ||||||||||||||||||| ||||||||||| | || |||||||||| |||| ||| ||||||| ||||| |||||||||   | |||  | ||||| ||    
T  7562426 tctgtttttcaatcttcaaatccctttcatccacaacatcatcttcatcaactaacctaaagtaactgcatcctttgtcacttgaatttttatagtttct 7562327  T
Q  261 gcaaccccaaaatttcttcccatagttaggattcaa 296  Q
     ||||||||||||||||||||| | || ||||||||    
T  7562326 acaaccccaaaatttcttcccacaatttggattcaa 7562291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 111 - 363
Target Start/End: Complemental strand, 21006832 - 21006580
Alignment:
Q  111 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcttcacca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21006832 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataaaatcatcgtcacca 21006733  T
Q  211 accaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgcaaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccg 310  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  21006732 accaacttaaagtagttgcaacctttgtcataagcattcttgtagttgctgcaaccccaaaatttcttcccatagttatgattcaaagagtcagtcaccg 21006633  T
Q  311 ttcgaactacagttggttctccacacctacaactcggatttccccttcttctc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21006632 ttcgaactacagttggttctccacacctacaactcggatttccccatcttctc 21006580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 21791112 - 21790958
Alignment:
Q  163 tgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgc 262  Q
    ||||||||||||||||| || |||||||| |||| |||||||||| |||| ||||||||||| ||||| |||||||||   | ||| || ||||| || |    
T  21791112 tgtttttcaatcttcaaatctctttcatccataacatcatcttcatcaactaacttaaagtaactgcatcctttgtcaatcgaatttctatagtttctac 21791013  T
Q  263 aaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccgttcgaac 317  Q
    | |||||||||||||||||| | || |||||||| || ||||| || ||||||||    
T  21791012 agccccaaaatttcttcccacaatttggattcaatgaatcagttacagttcgaac 21790958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 32412581 - 32412446
Alignment:
Q  161 tctgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgct 260  Q
    ||||||||||||||||||| ||||||||||| | || |||||||||| |||| ||| ||||||| || || |||||||||   | |||  | ||||| ||    
T  32412581 tctgtttttcaatcttcaaatccctttcatccacaacatcatcttcatcaactaacctaaagtaactacatcctttgtcacttgaatttttatagtttct 32412482  T
Q  261 gcaaccccaaaatttcttcccatagttaggattcaa 296  Q
     ||||||||||||||||||||| | || ||||||||    
T  32412481 acaaccccaaaatttcttcccacaatttggattcaa 32412446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 2525 - 2657
Alignment:
Q  163 tgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgc 262  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||| |||| ||||||||||| ||||| ||||||| |   | |||||| ||||| || |    
T  2525 tgtttttcaatcttcaaatccctttcatccataacatcatcttcatcaactaacttaaagtaactgcatcctttgtgactcgaattcctatagtttctac 2624  T
Q  263 aaccccaaaatttcttcccatagttaggattca 295  Q
    ||||||| |||||||||||||| ||||||||||    
T  2625 aaccccataatttcttcccataattaggattca 2657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 8516293 - 8516414
Alignment:
Q  161 tctgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgct 260  Q
    ||||||||||||||  ||| ||||||||||| |||| |||||||||| |||| ||||||||||||||||| |||||||||   | |||||||||||| ||    
T  8516293 tctgtttttcaatcaacaaatccctttcatccataacatcatcttcatcaactaacttaaagtagctgcatcctttgtcactcgaattcctgtagtttct 8516392  T
Q  261 gcaaccccaaaatttcttccca 282  Q
     |||||||| ||||| ||||||    
T  8516393 acaaccccagaattttttccca 8516414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 8516229 - 8516292
Alignment:
Q  118 cttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaatt 181  Q
    ||||||||||||||||||||||| ||||| ||  |||||||  |||||||||||||||||||||    
T  8516229 cttgttcttgataactcaaacttgaacttgtttttctttttcttctgtttttcaatcttcaatt 8516292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 342
Target Start/End: Original strand, 43018715 - 43018896
Alignment:
Q  161 tctgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgct 260  Q
    ||||||||||||||  ||| ||||||||||| |||| |||||||||| |||| |||||||||||||| || |||||||||   | |||  ||||||| ||    
T  43018715 tctgtttttcaatcaacaaatccctttcatccataacatcatcttcatcaactaacttaaagtagctacatcctttgtcactcgaatttatgtagtttct 43018814  T
Q  261 gcaaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccgttcgaactacagttggttctccacacctacaa 342  Q
     |||||||| |||||||||||| | ||| ||||||| |  ||||| |  ||||||| ||||  || ||||||||||||||||    
T  43018815 acaaccccagaatttcttcccaaaattacgattcaatgcatcagttatagttcgaattacaactgtttctccacacctacaa 43018896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 27657246 - 27657381
Alignment:
Q  161 tctgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgct 260  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||  |||| ||| ||||||| ||||| |||||||||   | ||| || ||||| ||    
T  27657246 tctgtttttcaatcttcaaatccctttcatccataacatcatcttcgtcaactaacctaaagtaactgcatcctttgtcactcgaatttctatagtttct 27657345  T
Q  261 gcaaccccaaaatttcttcccatagttaggattcaa 296  Q
     ||||||||||||||||||||| | || ||||||||    
T  27657346 acaaccccaaaatttcttcccacaatttggattcaa 27657381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 15808721 - 15808544
Alignment:
Q  163 tgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgc 262  Q
    |||||||||||   ||| || |||||||| |||| |||||||||| |||| ||||||||||||||||| |||||||||   | |||||||||||| || |    
T  15808721 tgtttttcaatgaacaaatctctttcatccataacatcatcttcatcaactaacttaaagtagctgcatcctttgtcactcgaattcctgtagtttctac 15808622  T
Q  263 aaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccgttcgaactacagttggttctccacacctac 340  Q
    ||| ||| |||||||||||| | ||| ||||||| |  ||||| || ||| ||| ||||  || ||||||||||||||    
T  15808621 aacaccataatttcttcccaaaattacgattcaatgcatcagttacagtttgaattacaactgtttctccacacctac 15808544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 296
Target Start/End: Original strand, 38800701 - 38800834
Alignment:
Q  163 tgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgc 262  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||| |||| ||||||||||| ||||| ||||| |||   | ||| || ||||| || |    
T  38800701 tgtttttcaatcttcaaatccctttcatccataacatcatcttcatcaactaacttaaagtaactgcatcctttttcaatcgaatttctatagtttctac 38800800  T
Q  263 aaccccaaaatttcttcccatagttaggattcaa 296  Q
    | |||||||||||||||||| | || ||||||||    
T  38800801 agccccaaaatttcttcccacaatttggattcaa 38800834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 342
Target Start/End: Complemental strand, 20949046 - 20948867
Alignment:
Q  163 tgtttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgc 262  Q
    ||||||||||||  ||| ||||||||||| |||| |||||||||| |||| | ||||||||||||||| |||||||||   | |||||||||||  || |    
T  20949046 tgtttttcaatcaacaaatccctttcatccataacatcatcttcatcaactatcttaaagtagctgcatcctttgtcactcgaattcctgtagtgtctac 20948947  T
Q  263 aaccccaaaatttcttcccatagttaggattcaaagagtcagtaaccgttcgaactacagttggttctccacacctacaa 342  Q
    ||||||| ||||| |||||| | ||| |||| || |  ||||| || ||||||| ||||  || ||||||||||| ||||    
T  20948946 aaccccataattttttcccaaaattacgattaaatgcatcagtcacagttcgaattacaactgtttctccacacccacaa 20948867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 296
Target Start/End: Complemental strand, 21541676 - 21541545
Alignment:
Q  165 tttttcaatcttcaattccctttcatcaataaaatcatcttcaccaaccaacttaaagtagctgcaacctttgtcataagcattcctgtagttgctgcaa 264  Q
    ||||||||||||||| ||||||||||| |||| |||||||||| |||| ||| ||||||| ||||| |||||||||   | |||  | ||||| || |||    
T  21541676 tttttcaatcttcaaatccctttcatccataacatcatcttcatcaactaacctaaagtaactgcatcctttgtcacttgaatttttatagtttctacaa 21541577  T
Q  265 ccccaaaatttcttcccatagttaggattcaa 296  Q
     ||||||||||||||||| | || ||||||||    
T  21541576 tcccaaaatttcttcccacaatttggattcaa 21541545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 5944514 - 5944429
Alignment:
Q  111 ccattttcttgttcttgataactcaaacttcaacttcttaatctttttactctgtttttcaatcttcaattccctttcatcaataa 196  Q
    ||||| ||||||||||||||||| || |||||||||||||  ||||||   | |||||||||||||||||||||||||||| ||||    
T  5944514 ccattgtcttgttcttgataacttaatcttcaacttcttagcctttttctccggtttttcaatcttcaattccctttcatccataa 5944429  T

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