View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_low_19 (Length: 296)
Name: NF12721_low_19
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 47486950 - 47486668
Alignment:
| Q |
1 |
agtggcagtgacaaacactacaagcaatatgcttgcaacaataccaatcccatcctgcgcacccttaggccacccttccattattatgccaaccactaaa |
100 |
Q |
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| T |
47486950 |
agtggcagtgacaaacactacaagcaatatgcttgcaacaataccaatcccatcctgcgcacccttaggccacccttccattattatgccaaccactaaa |
47486851 |
T |
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| Q |
101 |
gagacaaaagcacagaccgcaagtatcataagagttgtatcttgaagtgcttcccatacaaaaacccaaaatccccgggctggactttcagtgaatttat |
200 |
Q |
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| T |
47486850 |
gagacaaaagcacagaccgcaagtatcataagagttgtatcttgaagtgcttcccatacaaaaacccaaaatccccgggctggactttcagtgaatttat |
47486751 |
T |
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| Q |
201 |
taattccataaatttcttttctttgattcagcaagggctcggatgttgatatcccattgttgacacaggaattgagtttgtct |
283 |
Q |
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| T |
47486750 |
taattccataaatttcttttctttgattcagcaagggctcggatgttgatatcccattgttgacacaggaattgagtttgtct |
47486668 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 5418430 - 5418255
Alignment:
| Q |
35 |
gcaacaataccaatcccatcctgcgcacccttaggccacccttccattattatgccaaccactaaagagacaaaagcacagaccgcaagtatcataagag |
134 |
Q |
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|||||||| |||| ||||| || |||||||||||||| ||||| || |||||||| | | ||| |||| |||||| || |||||||||| |||| |
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| T |
5418430 |
gcaacaatcccaagaccatcatgagcacccttaggccatccttcagttgcaatgccaactatcagagacacaagagcacacactccaagtatcatgagag |
5418331 |
T |
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| Q |
135 |
ttgtatcttgaagtgcttcccatacaaaaacccaaaatccccgggctggactttcagtgaatttattaattccata |
210 |
Q |
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| T |
5418330 |
tcatgtcttgaagtgcttcccaaacaaaaacccagaagcttttagcttgactttcagtgaatttattgattccata |
5418255 |
T |
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