View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_low_2 (Length: 671)
Name: NF12721_low_2
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 18 - 661
Target Start/End: Original strand, 44047463 - 44048106
Alignment:
| Q |
18 |
gttatgggctataaataaacgtatgtgtaaaacatttttacaagacagaagagtaatgaaattcttaatagtgttttcaatagaagaaactcgattttga |
117 |
Q |
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| T |
44047463 |
gttatgggctataaataaacgtatgtgtaaaacatttttacaagacagaagagtaatgaaattcttaatagtgttttcaatagaagaaactcgattttga |
44047562 |
T |
|
| Q |
118 |
gttcgaaccttgaggaagatgtcaacagctcgatagagtccatcgcttgtaacgcgagcatgatccggaagtagttctgcaagtgctatgaattttgatg |
217 |
Q |
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| T |
44047563 |
gttctaaccttgaggaagatgtcaacagctcgatagagtccatcgcttgtaacgcgggcatgatccggaagtagttctgcaagtgctatgaattttgatg |
44047662 |
T |
|
| Q |
218 |
gcaacaagtttgagtctagtgctacttcagcgagaaaattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggactgtcaaa |
317 |
Q |
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| T |
44047663 |
gcaacaagtttgagtctagtgctacttcagcgagaaaattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggactgtcaaa |
44047762 |
T |
|
| Q |
318 |
ttcatactcgtacatcatttgattttcatctctgaagtcactgtcttcatcatccacctcgtccaaattcagaaaagtagaaaagatcctcaaaattgaa |
417 |
Q |
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| T |
44047763 |
ttcatactcgtacatcatttgattttcatctctgaagtcactgtcttcatcatccacctcgtccaaattcagaaaagtagaaaagatcctcaaaattgaa |
44047862 |
T |
|
| Q |
418 |
tctatatcatacattgtgttgtgagcactcgaaggtgaattcgttggaataagtatgtcttcaagaattgcctgatcgagttgtaaaccaattcgcctct |
517 |
Q |
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| T |
44047863 |
tctatatcatacattgtgttgtgagcactcgaaggtgaattcgttggaataagtatgtcttcaagaattgcctgatcgagttgtaaaccaattcgcctct |
44047962 |
T |
|
| Q |
518 |
ccaaatcacttctacaagaagttgatactaatgttgctattgcagttttcaataaacatgaaagaaatgctattggaactgagcttttcctagattgagt |
617 |
Q |
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| T |
44047963 |
ccaaatcacttctacaagaagttgatactaatgttgctattgcagttttcaataaacatgaaagaaatgctattggaactgagcttttcctagattgagt |
44048062 |
T |
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| Q |
618 |
tggtagtaagcgaacaatagtttcaacaatgaccctttgcttct |
661 |
Q |
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| T |
44048063 |
tggtagtaagcgaacaatagtttcaacaatgaccctttgtttct |
44048106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 124 - 323
Target Start/End: Complemental strand, 39824439 - 39824240
Alignment:
| Q |
124 |
accttgaggaagatgtcaacagctcgatagagtccatcgcttgtaacgcgagcatgatccggaagtagttctgcaagtgctatgaattttgatggcaaca |
223 |
Q |
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| T |
39824439 |
accttaaggaagatatcgactgctctatagagtccatcgcttacaattcgcgcatgatcaggaagtaactcagcaagtgaaatgaactttgatggaagca |
39824340 |
T |
|
| Q |
224 |
agtttgagtctagtgctacttcagcgagaaaattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggactgtcaaattcata |
323 |
Q |
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| T |
39824339 |
agtttgggtctaaagctacttcagcaagatagttatccagcaatttggataccttaagaattgagctttgttttggcgatcctgggctatcaaaatcata |
39824240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 460 - 661
Target Start/End: Complemental strand, 39824103 - 39823902
Alignment:
| Q |
460 |
gttggaataagtatgtcttcaagaattgcctgatcgagttgtaaaccaattcgcctctccaaatcacttctacaagaagttgatactaatgttgctattg |
559 |
Q |
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| T |
39824103 |
gttggaatcagaatatcttcaagaattgcttggtcaagttgcagaccaatccttctctccaaatcagatctacaagaagtagatactgatgatgctattg |
39824004 |
T |
|
| Q |
560 |
cagttttcaataaacatgaaagaaatgctattggaa-ctgagcttttcctagattgagttggtagtaagcgaacaatagtttcaacaatgaccctttgct |
658 |
Q |
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||| |||||| |||| ||| ||||| |||||||||| |||| |||||||| ||||||||||||||||| | | || |||||||||| ||||||||| | |
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| T |
39824003 |
cagatttcaacaaacttgagagaaaagctattggaatctga-cttttccttgattgagttggtagtaaactagttattgtttcaacaaggaccctttgtt |
39823905 |
T |
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| Q |
659 |
tct |
661 |
Q |
| |
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||| |
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| T |
39823904 |
tct |
39823902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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