View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12721_low_20 (Length: 286)

Name: NF12721_low_20
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12721_low_20
NF12721_low_20
[»] chr3 (4 HSPs)
chr3 (1-274)||(46103002-46103273)
chr3 (120-274)||(46118590-46118744)
chr3 (1-121)||(6435789-6435907)
chr3 (1-117)||(9261339-9261453)
[»] chr2 (2 HSPs)
chr2 (1-121)||(45658356-45658474)
chr2 (10-121)||(14868707-14868816)
[»] chr8 (5 HSPs)
chr8 (1-121)||(15630398-15630516)
chr8 (1-121)||(15277835-15277953)
chr8 (1-121)||(15458204-15458322)
chr8 (1-121)||(43217662-43217780)
chr8 (162-202)||(33470162-33470202)
[»] chr1 (2 HSPs)
chr1 (1-121)||(16851837-16851955)
chr1 (80-121)||(8313484-8313525)
[»] chr4 (3 HSPs)
chr4 (1-121)||(24183518-24183636)
chr4 (9-121)||(28475728-28475838)
chr4 (6-109)||(35308070-35308170)
[»] chr7 (3 HSPs)
chr7 (63-121)||(38789036-38789094)
chr7 (1-52)||(6187807-6187858)
chr7 (1-52)||(6194323-6194374)
[»] chr6 (2 HSPs)
chr6 (1-121)||(34516651-34516767)
chr6 (162-199)||(27904570-27904607)
[»] scaffold0191 (1 HSPs)
scaffold0191 (63-121)||(5088-5146)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 46103273 - 46103002
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||||||||||||| || | ||||||| ||||||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  46103273 aatgcgtcgatccacattagtgttcgttcctccagaaagcccaatggtggt--atgatactttggttcaacgttctgggggaacgggagtgttttaggtg 46103176  T
Q  101 gtggatcacgaacacggagagaatgctcgccgtataaacaaatcaagttctaaatacaacctcggtccttgggtaggataccgagttttcaaaaataaat 200  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46103175 gtggatcacgaacattgagagaatgctcgccgtataaacaaatcaagttctaaatacaacctcggtccttgggtaggataccgagttttcaaaaataaat 46103076  T
Q  201 aatgaaagttcgaaatacaacctgatgtaagtaaaattgtcatactattagctatcctatagtattgagtatct 274  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  46103075 aatgaaagttcgaaatacaacctgatgtaagtaaaaatgtcgtactattagctatcctatagtattgagtatct 46103002  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 46118744 - 46118590
Alignment:
Q  120 agaatgctcgccgtataaacaaatcaagttctaaatacaacctcggtccttgggtaggataccgagttttcaaaaataaataatgaaagttcgaaataca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  46118744 agaatgctcgccgtataaacaaatcaagttctaaatacaacctcggtccttgggcaggataccgagttttcaaaaataaataatgaaagtttgaaataca 46118645  T
Q  220 acctgatgtaagtaaaattgtcatactattagctatcctatagtattgagtatct 274  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46118644 acctgatgtaagtaaaattgtcatactattagctatcctataatattgagtatct 46118590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6435789 - 6435907
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||||||||||||| || ||||||||| ||||| ||| ||||||  |||||| |||||||||| ||||||  ||| || ||||||||||||||    
T  6435789 aatgcgtcgatccacattagtgttcgctcctccagaaagcgcaacggtggt--atgatattttggttcaaagttctgtgggaacgagagtgttttaggtg 6435886  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||| ||||||||||||    
T  6435887 gtggatcatgaacacggagag 6435907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 9261339 - 9261453
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||||||||||||| |   |||||||| |||||||||  |||||  |||||| |||||||||||||||||| ||||||||| |||||||||||    
T  9261339 aatgcgtcgatccacattagtgtcctctcctccagaaagcccaacagtggt--atgatattttggttcaacgttctgggggagcgggattgttttaggtg 9261436  T
Q  101 gtggatcacgaacacgg 117  Q
    |||||||| ||||||||    
T  9261437 gtggatcatgaacacgg 9261453  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 45658356 - 45658474
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||| ||||||||| || ||||||||| ||||||||| ||| ||  |||||| |||||||||||||||||| |||||||||||||||||||||    
T  45658356 aatgcgtcgattcacattagtgttcgctcctccagaaagcccaacggtagt--atgatattttggttcaacgttctgggggagcgggagtgttttaggtg 45658453  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||||||||    
T  45658454 gtggatcacgaacacggagag 45658474  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 14868707 - 14868816
Alignment:
Q  10 atccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtggtggatcac 109  Q
    |||||||||||| || ||||||||| ||||||||| ||||||  |||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  14868707 atccacattagttttcgctcctccagaaagcccaacggtggt--atgatattttggttcaaagttctgggggagcaggagtgttttaggtggtggatcac 14868804  T
Q  110 gaacacggagag 121  Q
    ||||||||||||    
T  14868805 gaacacggagag 14868816  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 15630398 - 15630516
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||||||||||||| || ||||||||| ||||| ||| | ||||  |||||| |||||||||| ||| ||| |||||||||||||||||||||    
T  15630398 aatgcgtcgatccacattagtgttcgctcctccagaaagctcaacgatggt--atgatattttggttcaaagttatgggggagcgggagtgttttaggtg 15630495  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||||||||    
T  15630496 gtggatcacgaacacggagag 15630516  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 15277953 - 15277835
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||||||||||||| || ||||||| | |||||| ||  | || |||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  15277953 aatgcgtcgatccacattagtgttcgctcctctagaaagcc-aaccgagg-gtatgatattttggttcaacgttctgggggagtgggagtgttttaggtg 15277856  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||||||||    
T  15277855 gtggatcacgaacacggagag 15277835  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 15458322 - 15458204
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||||||||||||| || ||||||| | |||||| ||  | || |||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  15458322 aatgcgtcgatccacattagtgttcgctcctctagaaagcc-aaccgagg-gtatgatattttggttcaacgttctgggggagtgggagtgttttaggtg 15458225  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||||||||    
T  15458224 gtggatcacgaacacggagag 15458204  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 43217780 - 43217662
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    ||||||||||||||||||||| || |||| || | |||| |||| |||| |  |||||| |||||||||||||| | | |||||||||||||||||||||    
T  43217780 aatgcgtcgatccacattagtgttcgctcatctagaaagtccaacggtgtt--atgatattttggttcaacgttttaggggagcgggagtgttttaggtg 43217683  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||| ||||    
T  43217682 gtggatcacgaacacgaagag 43217662  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 33470162 - 33470202
Alignment:
Q  162 tcggtccttgggtaggataccgagttttcaaaaataaataa 202  Q
    |||||||||| || ||||| |||||||||||||||||||||    
T  33470162 tcggtccttgagtcggatatcgagttttcaaaaataaataa 33470202  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 16851837 - 16851955
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    |||||||||||||| |||||| |  ||||||||| ||||||||| ||||||  |||||| |||||||||||||| ||| |||||||||||||||||||||    
T  16851837 aatgcgtcgatccaaattagtgtacgctcctccagaaagcccaacggtggt--atgatattttggttcaacgttttgggggagcgggagtgttttaggtg 16851934  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||| ||||    
T  16851935 gtggatcacgaacacgaagag 16851955  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 8313525 - 8313484
Alignment:
Q  80 ggagcgggagtgttttaggtggtggatcacgaacacggagag 121  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  8313525 ggagtgggagtgttctaggtggtggatcacgaacacggagag 8313484  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 24183636 - 24183518
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    |||| |||||||||||| ||| || ||||||||  ||||||||| ||||||  |||||| ||||||||||| |||||| |||| ||||||||||||||||    
T  24183636 aatgtgtcgatccacatcagtgttcgctcctccggaaagcccaacggtggt--atgatattttggttcaacattctgggggagtgggagtgttttaggtg 24183539  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||||||||    
T  24183538 gtggatcacgaacacggagag 24183518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 28475838 - 28475728
Alignment:
Q  9 gatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtggtggatca 108  Q
    ||||||||||||| || ||||||||| |||| |||||  ||||  ||||||   |||||||||||| | |  ||||||||||||| ||||||||||||||    
T  28475838 gatccacattagtgttggctcctccagaaagtccaattctggt--atgatatcatggttcaacgttgtaggagagcgggagtgttctaggtggtggatca 28475741  T
Q  109 cgaacacggagag 121  Q
    |||||||||||||    
T  28475740 cgaacacggagag 28475728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 35308070 - 35308170
Alignment:
Q  6 gtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtggtgga 105  Q
    |||||||||||||||| || ||||||||| |||| |||||  | ||  ||||||   |||||||||||| | | |||||||||||||| |||||||||||    
T  35308070 gtcgatccacattagtgtt-gctcctccaaaaagtccaattatagt--atgatatcctggttcaacgttgtaggggagcgggagtgttctaggtggtgga 35308166  T
Q  106 tcac 109  Q
    ||||    
T  35308167 tcac 35308170  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 38789094 - 38789036
Alignment:
Q  63 tggttcaacgttctggaggagcgggagtgttttaggtggtggatcacgaacacggagag 121  Q
    |||||||||||| | | |||||||||||||| ||||||||||||||| |||||||||||    
T  38789094 tggttcaacgttgtaggggagcgggagtgttctaggtggtggatcacaaacacggagag 38789036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6187807 - 6187858
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtg 52  Q
    ||||||||||||||||||||| || ||||||||| ||||||||| |||||||    
T  6187807 aatgcgtcgatccacattagtgttcgctcctccagaaagcccaacggtggtg 6187858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6194323 - 6194374
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtg 52  Q
    ||||||||||||||||||||| || ||||||||| ||||||||| |||||||    
T  6194323 aatgcgtcgatccacattagtgttcgctcctccagaaagcccaacggtggtg 6194374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 34516767 - 34516651
Alignment:
Q  1 aatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtg 100  Q
    |||| |||||||||||||||| || ||||||||| |||| |||||  ||| || |||||   | |||||||||| |  ||| ||||||||||| ||||||    
T  34516767 aatgtgtcgatccacattagtgttggctcctccagaaagtccaattctgg-gt-tgatatcctagttcaacgttgt--aggggcgggagtgttctaggtg 34516672  T
Q  101 gtggatcacgaacacggagag 121  Q
    |||||||||||||||||||||    
T  34516671 gtggatcacgaacacggagag 34516651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 27904570 - 27904607
Alignment:
Q  162 tcggtccttgggtaggataccgagttttcaaaaataaa 199  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  27904570 tcggtccttgggttggataccgagttttaaaaaataaa 27904607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 5088 - 5146
Alignment:
Q  63 tggttcaacgttctggaggagcgggagtgttttaggtggtggatcacgaacacggagag 121  Q
    |||||||||||| |   ||||||| |||||| |||||||||| ||||||||||||||||    
T  5088 tggttcaacgttgtaagggagcggcagtgttctaggtggtgggtcacgaacacggagag 5146  T

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