View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_low_25 (Length: 256)
Name: NF12721_low_25
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 41852414 - 41852502
Alignment:
| Q |
160 |
taaggattctgctgataccccgtagttttcttgggggtagcagcactaatcctcatcggtctagtagaacaataaacaccattcatctc |
248 |
Q |
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| T |
41852414 |
taaggattctgctgataccccgtagttttcttgggggtagcagcactaatcctcatcggtctagtagaacaataaacaccattcatctc |
41852502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41852276 - 41852382
Alignment:
| Q |
1 |
acttaattaaactaattatccaaacataagccctaacattatactaagcacttaattatactaattatcctaattatnnnnnnngtgtagggttttgtta |
100 |
Q |
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| T |
41852276 |
acttaattaaactaattatccaaacataagccctaacattatactaagcacttaattatactaattatcctaattataaaaaaagtgtagggttttgtta |
41852375 |
T |
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| Q |
101 |
taccttt |
107 |
Q |
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||||||| |
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| T |
41852376 |
taccttt |
41852382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41852226 - 41852296
Alignment:
| Q |
1 |
acttaattaaactaattatccaaacataagccctaacattatactaag-cacttaattatactaattatcc |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
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| T |
41852226 |
acttaattaaactaattatccaaacataagccctaacattctactaagtaacttaattaaactaattatcc |
41852296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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