View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_low_28 (Length: 249)
Name: NF12721_low_28
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44172964 - 44173201
Alignment:
| Q |
1 |
ctcagttgttgatatgctccttaattttctatgtaaggaaaatgtgcgtttttaagtttgtactttcctcctctnnnnnnntaattaagtacgcactccc |
100 |
Q |
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| T |
44172964 |
ctcagttgttgatatgctccttaattttctatgtaaggaaaatgtgcgtttttaagtttgtactttcctcctctaaaaaaataattaagtacgcactccc |
44173063 |
T |
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| Q |
101 |
tagtttccttatcgacaaattcatacacgtttagctataccctgttgagcggtgtcaattcaattgatgtatcaacccccttcatcgagttttcatgacc |
200 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44173064 |
tagtttccttatcgtcaa-ttcatacacgtttagctataccctgttgagcggtgtcaattcaattgatgtatcagcccccttcatcgagttttcatgacc |
44173162 |
T |
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| Q |
201 |
catgcatctttttgcagttgaaaatgaggtttgtttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
44173163 |
catgcatctttttgcagttgaaaatgaggtttgtttcat |
44173201 |
T |
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