View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12721_low_29 (Length: 248)
Name: NF12721_low_29
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 7940866 - 7941098
Alignment:
| Q |
14 |
cattttttactatctctttctttatactttgtttcctct--------ttcttcctaatttctggtcaccattaggatctattccttctcaaccaaatctt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7940866 |
cattttttactatctctttctttatactttgtttcctctcacttcttttcttcctaatttctggtcaccattaggatctattccttctcaaccaaatctt |
7940965 |
T |
|
| Q |
106 |
ttagggacctaagttgtagtttactttcataaaagatccattgatttaaatcgctatacactagactcaatgcaatgctccaagaaatgtagctctatat |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7940966 |
ttagcgacctaagttgtagtttactttcataaaagatccattgatttaaatcgctatacactagactcaatgcaatgctccaagaaatgtagccctatat |
7941065 |
T |
|
| Q |
206 |
tgagttgagatgtctaagtggtataatcctttg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7941066 |
tgagttgagatgtctaagtggtataatcctttg |
7941098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 7929015 - 7929171
Alignment:
| Q |
85 |
attccttctcaaccaaatcttttagggacctaagttgtagtttactttcataaaagatccattgatttaaatcgctatacactagactca-at----gca |
179 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||| || ||| |
|
|
| T |
7929015 |
attccttctcaacccaatcttttagggccctaagttgtagtttactttcataagagatccattgacttaaatcgttatacactagagtcacatgcgagca |
7929114 |
T |
|
| Q |
180 |
atgctccaagaaatgtagctctatattgagttgagatgtctaagtggtataatcctt |
236 |
Q |
| |
|
||||||||| |||| ||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
7929115 |
gtgctccaagtaatgcagccctacatagagttgagatgtctaagtggtataatcctt |
7929171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University