View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_low_30 (Length: 239)
Name: NF12721_low_30
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 44172761 - 44172983
Alignment:
| Q |
17 |
aatttggttccatatatgttcaactggttaacttgttctgaattagtgtccaatcatttggataatattcgagtttgattaattcaggctacttgtcnnn |
116 |
Q |
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| T |
44172761 |
aatttggttccatatatgttcaactggttaacttgttctgaattagtgtccaatcatttggataatattcgagtttgattaattcaggctacttgtc-aa |
44172859 |
T |
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| Q |
117 |
nnnnnntcaaattaggctcctttaattg-nnnnnnnacatttaggctatttatcctctatccatgcatgtaccccttgtctaggttgtcttcaattgcgt |
215 |
Q |
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| T |
44172860 |
aaaaaatcaaattgggctcctttaattgttttttttacatttaggctatttatcctctatccatgcatgtaccccttgtctaggttgtcttcaattgcgt |
44172959 |
T |
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| Q |
216 |
ctcactcagttgttgatatgctcc |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
44172960 |
ctcactcagttgttgatatgctcc |
44172983 |
T |
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