View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12721_low_36 (Length: 226)

Name: NF12721_low_36
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12721_low_36
NF12721_low_36
[»] chr2 (14 HSPs)
chr2 (56-129)||(9907262-9907335)
chr2 (1-109)||(43083741-43083853)
chr2 (24-122)||(29245285-29245386)
chr2 (62-109)||(9772442-9772489)
chr2 (42-109)||(22959397-22959464)
chr2 (26-109)||(24337443-24337529)
chr2 (56-109)||(34803473-34803526)
chr2 (56-109)||(11404551-11404604)
chr2 (56-109)||(40223396-40223449)
chr2 (56-109)||(43346462-43346515)
chr2 (26-98)||(4211004-4211077)
chr2 (69-109)||(27222484-27222524)
chr2 (69-109)||(35254097-35254137)
chr2 (69-109)||(35264706-35264746)
[»] chr7 (18 HSPs)
chr7 (1-123)||(21002112-21002237)
chr7 (56-129)||(466742-466815)
chr7 (1-123)||(9434320-9434445)
chr7 (1-102)||(19993120-19993220)
chr7 (24-123)||(5686615-5686717)
chr7 (26-123)||(5711357-5711457)
chr7 (26-109)||(167999-168083)
chr7 (1-109)||(6876947-6877057)
chr7 (26-109)||(22090282-22090366)
chr7 (26-109)||(4213127-4213213)
chr7 (56-109)||(2715387-2715440)
chr7 (56-109)||(9086337-9086390)
chr7 (56-109)||(11097117-11097170)
chr7 (56-109)||(26399846-26399899)
chr7 (56-109)||(26698879-26698932)
chr7 (26-98)||(8618508-8618581)
chr7 (26-98)||(17959802-17959875)
chr7 (69-109)||(11006298-11006338)
[»] chr3 (22 HSPs)
chr3 (56-129)||(23758341-23758414)
chr3 (56-129)||(12248531-12248604)
chr3 (1-123)||(16390581-16390703)
chr3 (1-98)||(37867583-37867682)
chr3 (1-98)||(37876101-37876200)
chr3 (62-129)||(10654365-10654430)
chr3 (1-126)||(9992950-9993076)
chr3 (56-109)||(13382356-13382409)
chr3 (56-109)||(13392950-13393003)
chr3 (56-109)||(4744819-4744872)
chr3 (56-109)||(5511775-5511828)
chr3 (56-109)||(5546707-5546760)
chr3 (56-109)||(5875348-5875401)
chr3 (26-81)||(19779537-19779593)
chr3 (1-106)||(29470824-29470927)
chr3 (1-126)||(6500020-6500144)
chr3 (1-81)||(6219694-6219774)
chr3 (26-98)||(13122809-13122882)
chr3 (26-98)||(20682794-20682867)
chr3 (69-109)||(28323915-28323955)
chr3 (69-109)||(38195853-38195893)
chr3 (69-109)||(39373183-39373223)
[»] chr5 (18 HSPs)
chr5 (1-123)||(5291568-5291693)
chr5 (1-107)||(31447662-31447768)
chr5 (1-98)||(27604473-27604572)
chr5 (56-109)||(15994310-15994363)
chr5 (56-109)||(31843189-31843242)
chr5 (24-109)||(39361450-39361538)
chr5 (26-98)||(40400169-40400242)
chr5 (71-109)||(36697433-36697471)
chr5 (56-109)||(9345764-9345817)
chr5 (56-109)||(23371733-23371786)
chr5 (56-109)||(23706580-23706633)
chr5 (56-109)||(24589081-24589134)
chr5 (56-109)||(30228473-30228526)
chr5 (56-109)||(36583526-36583579)
chr5 (56-109)||(42052592-42052645)
chr5 (1-106)||(1110211-1110314)
chr5 (69-109)||(14559085-14559125)
chr5 (42-109)||(22156268-22156337)
[»] chr1 (11 HSPs)
chr1 (1-123)||(19179978-19180103)
chr1 (26-109)||(21864722-21864806)
chr1 (1-98)||(4168322-4168419)
chr1 (56-109)||(12731552-12731605)
chr1 (56-109)||(12742145-12742198)
chr1 (26-109)||(12622853-12622937)
chr1 (1-98)||(5649413-5649510)
chr1 (1-106)||(153307-153410)
chr1 (69-109)||(3172666-3172706)
chr1 (69-109)||(35400257-35400297)
chr1 (69-109)||(35647782-35647822)
[»] scaffold1216 (1 HSPs)
scaffold1216 (1-106)||(181-285)
[»] chr6 (16 HSPs)
chr6 (1-93)||(9122169-9122262)
chr6 (1-82)||(27373870-27373951)
chr6 (1-82)||(27464223-27464304)
chr6 (42-109)||(34816849-34816916)
chr6 (1-102)||(25590277-25590378)
chr6 (71-109)||(4631959-4631997)
chr6 (71-109)||(32310780-32310818)
chr6 (56-109)||(3662413-3662466)
chr6 (56-109)||(12856018-12856071)
chr6 (56-109)||(17983824-17983877)
chr6 (56-109)||(25788797-25788850)
chr6 (71-109)||(26865861-26865899)
chr6 (71-109)||(27385485-27385523)
chr6 (71-109)||(27475898-27475936)
chr6 (42-98)||(7669487-7669543)
chr6 (42-98)||(32971554-32971610)
[»] chr4 (10 HSPs)
chr4 (1-123)||(40469636-40469757)
chr4 (56-109)||(451673-451726)
chr4 (56-109)||(21997513-21997566)
chr4 (56-109)||(30936181-30936234)
chr4 (1-98)||(19953999-19954098)
chr4 (26-98)||(17919213-17919286)
chr4 (26-109)||(16257020-16257106)
chr4 (42-98)||(24027121-24027177)
chr4 (69-109)||(24641413-24641453)
chr4 (69-109)||(27657746-27657786)
[»] chr8 (14 HSPs)
chr8 (1-109)||(26112378-26112486)
chr8 (56-109)||(15766286-15766339)
chr8 (56-109)||(15790423-15790476)
chr8 (24-123)||(19129829-19129931)
chr8 (71-109)||(44482228-44482266)
chr8 (56-109)||(209289-209342)
chr8 (56-109)||(242914-242967)
chr8 (56-109)||(722912-722965)
chr8 (56-109)||(796284-796337)
chr8 (56-109)||(29077811-29077864)
chr8 (56-109)||(32087405-32087458)
chr8 (26-98)||(6152212-6152285)
chr8 (69-109)||(13687712-13687752)
chr8 (69-109)||(36294030-36294070)
[»] scaffold0906 (1 HSPs)
scaffold0906 (71-129)||(3647-3706)
[»] scaffold0199 (1 HSPs)
scaffold0199 (71-129)||(23694-23753)
[»] scaffold0454 (1 HSPs)
scaffold0454 (71-109)||(2367-2405)
[»] scaffold0133 (1 HSPs)
scaffold0133 (56-109)||(32234-32287)
[»] scaffold0105 (1 HSPs)
scaffold0105 (69-109)||(46696-46736)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 9907262 - 9907335
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgtttataaatcatatgttctatac 129  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9907262 ttagtagctttgtctttgtatcttaacctttctttataaatattatcattgtttataaatcatatgttctatac 9907335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 43083853 - 43083741
Alignment:
Q  1 aaccttagttgcacacccaac-actctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaat 96  Q
    |||||||||||||||||||   | ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||  | |||| ||    
T  43083853 aaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatatatat 43083754  T
Q  97 attatcattgttt 109  Q
    |||||||||||||    
T  43083753 attatcattgttt 43083741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 29245386 - 29245285
Alignment:
Q  24 tctttgcttgttttactct-tgttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgtttataaatcatat 120  Q
    ||||||||||||||| ||| ||||||||||| ||||||||| |||| ||||||||||||| ||||  | |||||||| ||||||||||| |  |||||||    
T  29245386 tctttgcttgttttaatctctgttctaagtattttagttgccttgcatttgtatcttaacttttctatatataaatactatcattgtttctggatcatat 29245287  T
Q  121 gt 122  Q
    ||    
T  29245286 gt 29245285  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 9772442 - 9772489
Alignment:
Q  62 gctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  9772442 gctttgtctttgtatcttaacctttctttatatatattatcattgttt 9772489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 22959397 - 22959464
Alignment:
Q  42 ttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  22959397 ttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatattatcattgttt 22959464  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 24337443 - 24337529
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgttt 109  Q
    ||||||||||||| |||| ||||||||||||||||||||  ||| ||||||||||||| ||||  | |||| |||||||||||||||    
T  24337443 tttgcttgttttaatctttgttctaagtactttagttgcactgcatttgtatcttaacttttctatatatatatattatcattgttt 24337529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 34803473 - 34803526
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  34803473 ttagtagctttgtctttgtatcttaatctttctttatatatattatcattgttt 34803526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 11404551 - 11404604
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  11404551 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 11404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 40223449 - 40223396
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||| | ||||||||| |||||||||||||||    
T  40223449 ttagtagctttgtctttgtatcttaatccttctttatatatattatcattgttt 40223396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 43346515 - 43346462
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  43346515 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 43346462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 4211077 - 4211004
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  4211077 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 4211004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 27222524 - 27222484
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  27222524 ctttgtaccttaaccttcatttataaatattatcattgttt 27222484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 35254137 - 35254097
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  35254137 ctttgtaccttaaccttcatttataaatattatcattgttt 35254097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 35264746 - 35264706
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  35264746 ctttgtaccttaaccttcatttataaatattatcattgttt 35264706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 21002112 - 21002237
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaata 97  Q
    ||||||||||||||||||||   ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||  | ||||||||    
T  21002112 aaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatataaata 21002211  T
Q  98 ttatcattgtttataaatcatatgtt 123  Q
    |||||||||||| |  ||||||||||    
T  21002212 ttatcattgtttctggatcatatgtt 21002237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 466742 - 466815
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgtttataaatcatatgttctatac 129  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  466742 ttagtagctttctctttgtatcttaacctttctttataaatattatcattgtttataactcatatgttctatac 466815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9434445 - 9434320
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaata 97  Q
    |||||||||||||||||||    ||||||||||||||| | || |||||||||||||||||||| |||| ||||||||||||| ||||  | ||||||||    
T  9434445 aaccttagttgcacacccatttttctttgcttgttttaatttttgttctaagtactttagttgccttgcttttgtatcttaacttttctatatataaata 9434346  T
Q  98 ttatcattgtttataaatcatatgtt 123  Q
    |||||||||||| |  ||||||||||    
T  9434345 ttatcattgtttctggatcatatgtt 9434320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 19993120 - 19993220
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatta 100  Q
    |||||||||||||||||||||||||||||||||||| | | |||||||||||   ||||| ||||||||||||||||||| | | ||| |||||||||||    
T  19993120 aaccttagttgcacacccaacactctttgcttgtttaatttttgttctaagt-tgttagtagctttgcctttgtatcttatcttatctatataaatatta 19993218  T
Q  101 tc 102  Q
    ||    
T  19993219 tc 19993220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 5686717 - 5686615
Alignment:
Q  24 tctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgtttataaatcatat 120  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||  | ||||||||||||| |||||| |  |||||||    
T  5686717 tctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatataaatattatcgttgtttctggatcatat 5686618  T
Q  121 gtt 123  Q
    |||    
T  5686617 gtt 5686615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 5711457 - 5711357
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgtttataaatcatatgt 122  Q
    ||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||  | ||||||||||||| |||||| |  |||||||||    
T  5711457 tttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatataaatattatcgttgtttctggatcatatgt 5711358  T
Q  123 t 123  Q
    |    
T  5711357 t 5711357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 168083 - 167999
Alignment:
Q  26 tttgcttgttttactc-ttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||| |  ||||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  168083 tttgcttgttttaattgttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatattatcattgttt 167999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6876947 - 6877057
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaata 97  Q
    |||||||||||||||||||    | ||||||||||||| |||| ||||||||||||||||||||  ||| ||||||||||||| ||||  | |||| |||    
T  6876947 aaccttagttgcacacccattttt-tttgcttgttttaatctttgttctaagtactttagttgcactgcatttgtatcttaacttttcaatatatatata 6877045  T
Q  98 ttatcattgttt 109  Q
    ||||||||||||    
T  6877046 ttatcattgttt 6877057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 22090366 - 22090282
Alignment:
Q  26 tttgcttgttttact-cttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||| | ||||||||| |||||||||||||  ||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  22090366 tttgcttgttttaattcttgttctacgtactttagttgcactgcatttgtatctcaacttttctatatatatattatcattgttt 22090282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 4213213 - 4213127
Alignment:
Q  26 tttgcttgttttact-cttgttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgttt 109  Q
    ||||||||||||| | |||||||||||||||||||||||  ||| ||||||||| ||| ||||  | |||| |||||||||||||||    
T  4213213 tttgcttgttttaattcttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatatattatcattgttt 4213127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 2715387 - 2715440
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  2715387 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 2715440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 9086390 - 9086337
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  9086390 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 9086337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 11097170 - 11097117
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  11097170 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 11097117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 26399846 - 26399899
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  26399846 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 26399899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 26698879 - 26698932
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  26698879 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 26698932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 8618581 - 8618508
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  8618581 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 8618508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 17959802 - 17959875
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  17959802 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 17959875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 11006338 - 11006298
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  11006338 ctttgtaccttaaccttcatttataaatattatcattgttt 11006298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 23758414 - 23758341
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgtttataaatcatatgttctatac 129  Q
    ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23758414 ttagtagctttgtctttgtatcttaacctttatttataaatattatcattgtttataaatcatatgttctatac 23758341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 12248531 - 12248604
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgtttataaatcatatgttctatac 129  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12248531 ttagtagctttatctttgtatcttaacctttctttataaatattatcattgtttttaaatcatatgttctatac 12248604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 16390581 - 16390703
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatt 99  Q
    |||||||||||||||||| ||| ||||||||||||||| | || | |||||||  || ||| ||||||||||||||||||||| | ||| ||||||| ||    
T  16390581 aaccttagttgcacacccgacattctttgcttgttttaatttttgctctaagttgtt-agtagctttgcctttgtatcttaacttatctatataaatgtt 16390679  T
Q  100 atcattgtttataaatcatatgtt 123  Q
    |||||||||| |||||| ||||||    
T  16390680 atcattgtttctaaatcttatgtt 16390703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37867682 - 37867583
Alignment:
Q  1 aaccttagttgcacacccaac-actctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    |||||||||||||||||||   | ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||| |||| ||||    
T  37867682 aaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatatatat 37867583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37876200 - 37876101
Alignment:
Q  1 aaccttagttgcacacccaac-actctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    |||||||||||||||||||   | ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||| |||| ||||    
T  37876200 aaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatatatat 37876101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 10654365 - 10654430
Alignment:
Q  62 gctttgcctttgtatcttaacctttctttataaatattatcattgtttataaatcatatgttctatac 129  Q
    |||||||||||||||  ||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  10654365 gctttgcctttgtattata--ctttctttataaatatcatcattgtttataaatcatatgttctatac 10654430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 9992950 - 9993076
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttg-ttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatt 99  Q
    ||||||||||||||||||||||||||| ||||| ||||||| | ||||||| |   | ||| ||||||||| ||||||||||  | ||  ||||||||||    
T  9992950 aaccttagttgcacacccaacactcttagcttgtttttactttggttctaaatttatcagtagctttgcctctgtatcttaatttgtcaatataaatatt 9993049  T
Q  100 atcattgtttataaatcatatgttcta 126  Q
    |||||| ||| | ||  ||||||||||    
T  9993050 atcattatttctgaaaaatatgttcta 9993076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 13382356 - 13382409
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  13382356 ttagtagctttgtctttgtatcttaatctttctttatatatattatcattgttt 13382409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 13392950 - 13393003
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  13392950 ttagtagctttgtctttgtatcttaatctttctttatatatattatcattgttt 13393003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 4744872 - 4744819
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  4744872 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 4744819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 5511828 - 5511775
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  5511828 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 5511775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 5546707 - 5546760
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  5546707 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 5546760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 5875348 - 5875401
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  5875348 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 5875401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 19779593 - 19779537
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaa 81  Q
    ||||||||||||| |||| ||||||||||||||||||||  ||| ||||||||||||    
T  19779593 tttgcttgttttaatctttgttctaagtactttagttgcactgcttttgtatcttaa 19779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29470824 - 29470927
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttct-ttataaatatt 99  Q
    ||||||||||||||||||||   | |||||||||||   | ||  |||||||| | ||||||||||| |||||||||||||| | ||| |||||||| ||    
T  29470824 aaccttagttgcacacccaa---tttttgcttgtttattttttcctctaagtattctagttgctttgactttgtatcttaacttgtctattataaatgtt 29470920  T
Q  100 atcattg 106  Q
    |||||||    
T  29470921 atcattg 29470927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 6500020 - 6500144
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttg-ttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatt 99  Q
    |||||||||||||||||||||||| || ||||| |||||||  |||||||| |   | ||| ||||| ||||||||||||||| | ||  ||| ||||||    
T  6500020 aaccttagttgcacacccaacacttttagcttgtttttacttgtgttctaaat-tatcagtagcttttcctttgtatcttaacttgtcaatat-aatatt 6500117  T
Q  100 atcattgtttataaatcatatgttcta 126  Q
    |||||||||| | ||  ||||||||||    
T  6500118 atcattgtttctgaaaaatatgttcta 6500144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6219694 - 6219774
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaa 81  Q
    ||||||||||||||||| ||   | |||||||| |||| |||| ||||||||||||||||||||  ||| ||||||||||||    
T  6219694 aaccttagttgcacacc-aattttttttgcttgctttaatctttgttctaagtactttagttgcactgcttttgtatcttaa 6219774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 13122882 - 13122809
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  13122882 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 13122809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 20682794 - 20682867
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  20682794 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 20682867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 28323915 - 28323955
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  28323915 ctttgtaccttaaccttcatttataaatattatcattgttt 28323955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 38195893 - 38195853
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  38195893 ctttgtaccttaaccttcatttataaatattatcattgttt 38195853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 39373223 - 39373183
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  39373223 ctttgtaccttaaccttcatttataaatattatcattgttt 39373183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5291693 - 5291568
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaata 97  Q
    |||||||||||||||||||    ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||  | ||||||||    
T  5291693 aaccttagttgcacacccagttttctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatataaata 5291594  T
Q  98 ttatcattgtttataaatcatatgtt 123  Q
    |||||||||||| |  ||||||||||    
T  5291593 ttatcattgtttctggatcatatgtt 5291568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31447662 - 31447768
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgtttt-actcttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatt 99  Q
    |||||||||||||||||||||| |||||||||||||| | | |||||||||||   ||||| ||||||||||||||||||||| | ||| ||||||| ||    
T  31447662 aaccttagttgcacacccaacattctttgcttgttttaatttttgttctaagt-tgttagtagctttgcctttgtatcttaacttatctatataaatgtt 31447760  T
Q  100 atcattgt 107  Q
    ||||||||    
T  31447761 atcattgt 31447768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 27604572 - 27604473
Alignment:
Q  1 aaccttagttgcacacccaac-actctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    |||||||||||||||||||   | ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||| |||| ||||    
T  27604572 aaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatatatat 27604473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 15994363 - 15994310
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  15994363 ttagtagctttgtctttgtatcttaacctttctttatatatattatcattgttt 15994310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 31843189 - 31843242
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  31843189 ttagtagctttgtctttgtatcttaacctttctttatatatattatcattgttt 31843242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 39361450 - 39361538
Alignment:
Q  24 tctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgttt 109  Q
    ||||||||||||||| |||| ||||||||||||||||||||  ||| ||||||||| ||| ||||  | |||| |||||||||||||||    
T  39361450 tctttgcttgttttaatctttgttctaagtactttagttgcactgcatttgtatctcaacttttcgatatatatatattatcattgttt 39361538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 40400169 - 40400242
Alignment:
Q  26 tttgcttgttttactcttg-ttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| ||||  ||||||||||||||||||| |||| ||||||||||||| ||||| |||| ||||    
T  40400169 tttgcttgttttaatctttattctaagtactttagttgcattgcatttgtatcttaacttttctatatatatat 40400242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 36697433 - 36697471
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36697433 ttgtaccttaacctttctttataaatattatcattgttt 36697471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 9345764 - 9345817
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  9345764 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 9345817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 23371733 - 23371786
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  23371733 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 23371786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 23706580 - 23706633
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  23706580 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 23706633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 24589134 - 24589081
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  24589134 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 24589081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 30228526 - 30228473
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  30228526 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 30228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 36583579 - 36583526
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  36583579 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 36583526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 42052592 - 42052645
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  42052592 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 42052645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 1110314 - 1110211
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttct-ttataaatatt 99  Q
    ||||||||||||||||||||   | |||||||||||   | ||  |||||||| | ||||||||||| |||||||||||||| | ||| |||||||| ||    
T  1110314 aaccttagttgcacacccaa---tttttgcttgtttatattttcctctaagtattctagttgctttgactttgtatcttaacttgtctattataaatgtt 1110218  T
Q  100 atcattg 106  Q
    |||||||    
T  1110217 atcattg 1110211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 14559125 - 14559085
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  14559125 ctttgtatcttaatctttctttatatatattatcattgttt 14559085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 22156268 - 22156337
Alignment:
Q  42 ttgttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgttt 109  Q
    ||||||||||||||||||||||  ||| ||||||||| ||| ||||  | |||| |||||||||||||||    
T  22156268 ttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatatattatcattgttt 22156337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 19180103 - 19179978
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaata 97  Q
    |||||||||||||||||||    ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||  | ||||||||    
T  19180103 aaccttagttgcacacccagttttctttgcttgttttaatctttgttctaagtactttagttgccttgcatttgtatcttaacttttctatatataaata 19180004  T
Q  98 ttatcattgtttataaatcatatgtt 123  Q
     ||||||||||| |  ||||||||||    
T  19180003 ctatcattgtttctggatcatatgtt 19179978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 21864806 - 21864722
Alignment:
Q  26 tttgcttgttttact-cttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||| | |||||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  21864806 tttgcttgttttaattcttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatattatcattgttt 21864722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4168419 - 4168322
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    |||||||||||||||||||    | ||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||| |||| ||||    
T  4168419 aaccttagttgcacacccattttt-tttgcttgttttaatctttgttctaagtactttagttgcattgcatttgtatcttaacttttctatatatatat 4168322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 12731605 - 12731552
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  12731605 ttagtagctttgtctttgtatcttaacctttctttatatatattatcattgttt 12731552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 12742198 - 12742145
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  12742198 ttagtagctttgtctttgtatcttaacctttctttatatatattatcattgttt 12742145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 12622853 - 12622937
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  12622853 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatattatcattgttt 12622937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5649413 - 5649510
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||||||| ||   | ||||||||||||| |||| ||||||||||||||||||||  ||| ||||||||||||| ||||| |||| ||||    
T  5649413 aaccttagttgcacacc-aattttttttgcttgttttaatctttgttctaagtactttagttgcactgcatttgtatcttaacttttctatatatatat 5649510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 153307 - 153410
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttct-ttataaatatt 99  Q
    ||||||||||||||||||||   | |||||||||||   | ||  |||||||| | ||||||||||| |||||||||||||| | ||| |||||||| ||    
T  153307 aaccttagttgcacacccaa---tttttgcttgtttattttttcctctaagtattctagttgctttgactttgtatcttaacttgtctattataaatgtt 153403  T
Q  100 atcattg 106  Q
    |||||||    
T  153404 atcattg 153410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 3172706 - 3172666
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  3172706 ctttgtaccttaaccttcatttataaatattatcattgttt 3172666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 35400257 - 35400297
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  35400257 ctttgtaccttaaccttcatttataaatattatcattgttt 35400297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 35647782 - 35647822
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  35647782 ctttgtaccttaaccttcatttataaatattatcattgttt 35647822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1216 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1216
Description:

Target: scaffold1216; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 285 - 181
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatta 100  Q
    ||||||||||||||||||| |  ||||||||||||| | | |||||||||||| |||||| |||||||||||||||||| || | ||||||||||| |||    
T  285 aaccttagttgcacacccatct-tctttgcttgtttaatttttgttctaagtattttagtagctttgcctttgtatcttgacttatctttataaatgtta 187  T
Q  101 tcattg 106  Q
    ||||||    
T  186 tcattg 181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 9122169 - 9122262
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttata 93  Q
    ||||||||||||||||||||   ||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||| ||||    
T  9122169 aaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgccttgcgtttgtatcttaacttttctatata 9122262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27373951 - 27373870
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgtttt-actcttgttctaagtactttagttgctttgcctttgtatcttaac 82  Q
    ||||||||||||||||||||||||||||||||||||| | | |||||||||||   ||||| | |||||||||||||||||||    
T  27373951 aaccttagttgcacacccaacactctttgcttgttttaatttttgttctaagt-tgttagtagttttgcctttgtatcttaac 27373870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27464304 - 27464223
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgtttt-actcttgttctaagtactttagttgctttgcctttgtatcttaac 82  Q
    ||||||||||||||||||||||||||||||||||||| | | |||||||||||   ||||| | |||||||||||||||||||    
T  27464304 aaccttagttgcacacccaacactctttgcttgttttaatttttgttctaagt-tgttagtagttttgcctttgtatcttaac 27464223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 34816849 - 34816916
Alignment:
Q  42 ttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  34816849 ttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatattatcattgttt 34816916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25590378 - 25590277
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactc-ttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatt 99  Q
    |||||||||||||||||||    || ||||| |||||| || ||||||||||||||||| ||| ||||| ||||||||||||| | ||| ||||||||||    
T  25590378 aaccttagttgcacacccatttttc-ttgctagttttaatctttgttctaagtactttaattgatttgcttttgtatcttaacttatctatataaatatt 25590280  T
Q  100 atc 102  Q
    |||    
T  25590279 atc 25590277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 4631997 - 4631959
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  4631997 ttgtaccttaacctttctttataaatattatcattgttt 4631959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 32310780 - 32310818
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  32310780 ttgtaccttaacctttctttataaatattatcattgttt 32310818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 3662466 - 3662413
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  3662466 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 3662413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 12856071 - 12856018
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||| | ||||||||| |||||||||||||||    
T  12856071 ttagtagctttgtctttgtatcttaatccttctttatatatattatcattgttt 12856018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 17983824 - 17983877
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  17983824 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 17983877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 25788850 - 25788797
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  25788850 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 25788797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 26865899 - 26865861
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  26865899 ttgtatcttaatctttctttatatatattatcattgttt 26865861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 27385523 - 27385485
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  27385523 ttgtaccttaacctttctttataaatattatcaatgttt 27385485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 27475936 - 27475898
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  27475936 ttgtaccttaacctttctttataaatattatcaatgttt 27475898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 7669487 - 7669543
Alignment:
Q  42 ttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  7669487 ttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 7669543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 32971554 - 32971610
Alignment:
Q  42 ttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  32971554 ttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 32971610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 40469636 - 40469757
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactcttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatta 100  Q
    |||||||||||||||||||    | ||||||||||| | | ||||||||| || |||||| |||||||||||||||||| || | ||||||||||| |||    
T  40469636 aaccttagttgcacacccattttt-tttgcttgtttaatttttgttctaaatattttagtagctttgcctttgtatcttgacttgtctttataaatgtta 40469734  T
Q  101 tcattgtttataaatcatatgtt 123  Q
    |||||| || | |||||||||||    
T  40469735 tcattgcttctgaatcatatgtt 40469757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 451726 - 451673
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  451726 ttagtagctttgtctttgtatcttaacctttctttatatatattatcattgttt 451673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 21997566 - 21997513
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  21997566 ttagtagctttgtctttgtatcttaacctttctttatatatattatcattgttt 21997513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 30936181 - 30936234
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  30936181 ttagtagctttgtctttgtatcttaacctttctttatatatattatcattgttt 30936234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19953999 - 19954098
Alignment:
Q  1 aaccttagttgcacacccaac-actctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    |||||||||||||||||||   | ||||||||||||||| |||| ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  19953999 aaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 19954098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 17919286 - 17919213
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| |||| ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  17919286 tttgcttgttttaatctttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 17919213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 16257106 - 16257020
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgttt 109  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||  | |||| |||||||||||||||    
T  16257106 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatatattatcattgttt 16257020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 24027121 - 24027177
Alignment:
Q  42 ttgttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  24027121 ttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 24027177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 24641453 - 24641413
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  24641453 ctttgtaccttaaccttcatttataaatattatcattgttt 24641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 27657786 - 27657746
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  27657786 ctttgtaccttaaccttcatttataaatattatcattgttt 27657746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 26112486 - 26112378
Alignment:
Q  1 aaccttagttgcacacccaacactctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatatt 99  Q
    |||||||||||||||||||    | ||||||||||||| |||| ||||||||||||||||||||  ||| | ||||||||||| ||||| |||| |||||    
T  26112486 aaccttagttgcacacccattttt-tttgcttgttttaatctttgttctaagtactttagttgcactgcatctgtatcttaacttttctatatatatatt 26112388  T
Q  100 atcattgttt 109  Q
    ||||||||||    
T  26112387 atcattgttt 26112378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 15766286 - 15766339
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  15766286 ttagtagctttgtctttgtatcttaatctttctttatatatattatcattgttt 15766339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 15790423 - 15790476
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  15790423 ttagtagctttgtctttgtatcttaatctttctttatatatattatcattgttt 15790476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 19129931 - 19129829
Alignment:
Q  24 tctttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttc--tttataaatattatcattgtttataaatcatat 120  Q
    |||||||||||| || |||| |||||||||| ||||||||  |||| ||||||||||||| ||||  | |||||||| ||||||||||| |  |||||||    
T  19129931 tctttgcttgttataatctttgttctaagtattttagttgtcttgcatttgtatcttaacttttctatatataaatactatcattgtttctggatcatat 19129832  T
Q  121 gtt 123  Q
    |||    
T  19129831 gtt 19129829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 44482266 - 44482228
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  44482266 ttgtaccttaacctttctttataaatattatcattgttt 44482228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 209289 - 209342
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  209289 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 209342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 242967 - 242914
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  242967 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 242914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 722912 - 722965
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  722912 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 722965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 796337 - 796284
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  796337 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 796284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 29077864 - 29077811
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  29077864 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 29077811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 32087405 - 32087458
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  32087405 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 32087458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 6152285 - 6152212
Alignment:
Q  26 tttgcttgttttactctt-gttctaagtactttagttgctttgcctttgtatcttaacctttctttataaatat 98  Q
    ||||||||||||| | || ||||||||||||||||||||  ||| ||||||||| ||| ||||| |||| ||||    
T  6152285 tttgcttgttttaatttttgttctaagtactttagttgcactgcatttgtatctcaacttttctatatatatat 6152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 13687712 - 13687752
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  13687712 ctttgtaccttaaccttcatttataaatattatcattgttt 13687752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 36294070 - 36294030
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||||||||| | ||||||||| |||||||||||||||    
T  36294070 ctttgtatcttaatccttctttatatatattatcattgttt 36294030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0906 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0906
Description:

Target: scaffold0906; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 3647 - 3706
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttta-taaatcatatgttctatac 129  Q
    ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  3647 ttgtatcttaactcttctttataaatattatcattgtttattaaatcatatgttctatac 3706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 23753 - 23694
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt-ataaatcatatgttctatac 129  Q
    ||||| ||||||  |||||||||||||||||||||||||  |||||||||||||||||||    
T  23753 ttgtaacttaactcttctttataaatattatcattgtttgttaaatcatatgttctatac 23694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 2405 - 2367
Alignment:
Q  71 ttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  2405 ttgtaccttaacctttctttataaatattatcattgttt 2367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 32287 - 32234
Alignment:
Q  56 ttagttgctttgcctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||| ||| || ||||||||||||| ||||||||||| |||||||||||||||    
T  32287 ttagtagctgtgtctttgtatcttaatctttctttatatatattatcattgttt 32234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 46696 - 46736
Alignment:
Q  69 ctttgtatcttaacctttctttataaatattatcattgttt 109  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  46696 ctttgtaccttaaccttcatttataaatattatcattgttt 46736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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