View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12721_low_5 (Length: 470)

Name: NF12721_low_5
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12721_low_5
NF12721_low_5
[»] chr7 (4 HSPs)
chr7 (196-454)||(18008737-18008995)
chr7 (1-146)||(18009141-18009288)
chr7 (161-213)||(18009028-18009080)
chr7 (291-344)||(18790908-18790961)
[»] scaffold0989 (1 HSPs)
scaffold0989 (295-454)||(977-1136)
[»] chr3 (2 HSPs)
chr3 (291-454)||(12074373-12074536)
chr3 (291-343)||(15672049-15672101)
[»] chr8 (2 HSPs)
chr8 (295-378)||(3507345-3507428)
chr8 (290-345)||(26946912-26946966)
[»] chr2 (1 HSPs)
chr2 (291-346)||(20118240-20118295)
[»] chr1 (1 HSPs)
chr1 (291-345)||(36815404-36815458)
[»] chr4 (2 HSPs)
chr4 (291-351)||(4890737-4890797)
chr4 (316-377)||(3640105-3640166)
[»] chr6 (1 HSPs)
chr6 (291-344)||(1510440-1510493)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 196 - 454
Target Start/End: Complemental strand, 18008995 - 18008737
Alignment:
Q  196 ctagaaagcttgttatgtatctagaagggacttgtcatttttaaaaccaaactagcagaagcaagtacaagcaagtaaacaaagatcaaagtgtcctcct 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18008995 ctagaaagcttgttatgtatctagaagggacttgtcatttttaaaaccaaactagtagaagcaagtacaagcaagtaaacaaagatcaaagtgtcctcct 18008896  T
Q  296 cctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaattattacattgtaacagcg 395  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  18008895 cctaaattcctcagaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttaggttctgagaagaaattattacattgtaacaacg 18008796  T
Q  396 agtaatggtgcggcatccgtctaagttacacttcttaagcggagtacttctgataattg 454  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  18008795 agtaatggtgcggcatccgtctaagttacacttcttaaggggagtacttatgataattg 18008737  T

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Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 18009288 - 18009141
Alignment:
Q  1 gaatatgatttgatacatatatattgttgttatatgtattgttgttttttatttccctagacaaata--ataataagaggtaattttgccatttggtagg 98  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  18009288 gaatatgatttgatacatatatattcttgttatatgtattgttgttttttatttccctagacaaatatcataataagaggtaattttgccatttggtagg 18009189  T
Q  99 gtggaaaaatgaatggatttgaatttagattaaaagtaattgttttta 146  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18009188 gtggaaaaatggatggatttgaatttagattaaaagtaattgttttta 18009141  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 18009080 - 18009028
Alignment:
Q  161 tttcaaagggcgtatcacatcgatcatatatgtatctagaaagcttgttatgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18009080 tttcaaagggcgtatcacatcgatcatatatgtatctagaaagcttgttatgt 18009028  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 18790961 - 18790908
Alignment:
Q  291 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaa 344  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  18790961 ctcctcctaaatttctcacaaagttctcactacaaccttctccttttccaacaa 18790908  T

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Target: scaffold0989 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 295 - 454
Target Start/End: Complemental strand, 1136 - 977
Alignment:
Q  295 tcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaattattacattgtaacagc 394  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| || || ||||||||||| |||||||| ||| || |  ||    
T  1136 tcctaaattcctcacaaagttctcaatataatcttctccttttccaacaaagtggtatcagagcttaggttctgagaataaattattccatagttatggc 1037  T
Q  395 gagtaatggtgcggcatccgtctaagttacacttcttaagcggagtacttctgataattg 454  Q
    |   ||||| ||||||||| || ||||| ||||||| ||  ||||||| | |||||||||    
T  1036 ggtcaatggagcggcatccttccaagttccacttctcaaagggagtacctatgataattg 977  T

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Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 454
Target Start/End: Original strand, 12074373 - 12074536
Alignment:
Q  291 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaattattacattgtaa 390  Q
    ||||||||||||||||||| || ||| ||||||||| ||||||||||||| |||||||| |||| || || |||| |||||||||||| || |||||| |    
T  12074373 ctcctcctaaattcctcacgaaattcccactataacattctccttttccatcaaagtggcatcagagcttaggttatgagaagaaattgttccattgtca 12074472  T
Q  391 cagcgagtaatggtgcggcatccgtctaagttacacttcttaagcggagtacttctgataattg 454  Q
      ||| |||| || ||||||||| |||||||| ||||||| ||  ||||||| | |||||||||    
T  12074473 tggcgggtaacggagcggcatccttctaagttccacttctcaaagggagtacctatgataattg 12074536  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 15672101 - 15672049
Alignment:
Q  291 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaaca 343  Q
    |||||||||| || ||||||||||| |||||| ||||||||||||||||||||    
T  15672101 ctcctcctaagtttctcacaaagttatcactacaaccttctccttttccaaca 15672049  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 3507345 - 3507428
Alignment:
Q  295 tcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaatt 378  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || | || || |||||||||||||||||    
T  3507345 tcctcaattcctcacaaagttctcactataaccttcttctttttcaacaaagtggcattagagcttaggttctgagaagaaatt 3507428  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 26946966 - 26946912
Alignment:
Q  290 cctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaa 345  Q
    |||||||||||||| |||||||||| |||||||||||||||| | |||||||||||    
T  26946966 cctcctcctaaatttctcacaaagt-ctcactataaccttcttcctttccaacaaa 26946912  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 20118295 - 20118240
Alignment:
Q  291 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaag 346  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20118295 ctcctcctaaattcctcacaaagttctcaatataaccttctccttttccaacaaag 20118240  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 36815458 - 36815404
Alignment:
Q  291 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaa 345  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||    
T  36815458 ctcctcctaaattcctcataaagttctcgctataaccttatccttttccaacaaa 36815404  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 4890797 - 4890737
Alignment:
Q  291 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaa 351  Q
    |||||||||||||||||||| | || ||| |||||||||||||||||||||| | ||||||    
T  4890797 ctcctcctaaattcctcacatacttttcattataaccttctccttttccaactatgtggaa 4890737  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 3640105 - 3640166
Alignment:
Q  316 ctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaat 377  Q
    ||||||||||| |||||||||| ||||||||||  |||| || || |||||||| |||||||    
T  3640105 ctcactataacgttctcctttttcaacaaagtgacatcagagcttaggttctgataagaaat 3640166  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 1510493 - 1510440
Alignment:
Q  291 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaa 344  Q
    |||||||||||  ||| |||||||| ||||||| ||||||||||||| ||||||    
T  1510493 ctcctcctaaaccccttacaaagttttcactattaccttctccttttacaacaa 1510440  T

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