View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12721_low_7 (Length: 446)
Name: NF12721_low_7
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 4710399 - 4709982
Alignment:
| Q |
20 |
tcattatgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttatacatttggata- |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4710399 |
tcattatgcttggaggacctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatccgcgcatgcctttatacatttggatac |
4710300 |
T |
|
| Q |
119 |
-aaattattcatttacgaaattagagtgtgcatctatactggcataacactcctatataaaccaaaaagttgtgattcgaatcaacctagttagcgattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710299 |
aaaattattcatttacgaaattagagtgcccatctatactggcatcacactcctatataaaccaaaaagttgtgattcgaatcaacctagttagcgattc |
4710200 |
T |
|
| Q |
218 |
aaatcacctttgtatttttggatcatgtttcttcatcagagagtcataatttaaatcgaccacgtaatgtgactcaaatcaacttgataaaaaatgatta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4710199 |
aaatcacctttgtatttttggatcatgtttcttaatcagagagtcataatttaaatcgaccacgtaatgtgactcaaatcaacttgataaaaagtgatta |
4710100 |
T |
|
| Q |
318 |
ttcgaatccacctaataatgtgatttaaatcatgcacatgatttttcagatttttaatgcataagaattgtatactcataactctgattcattctcatgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710099 |
ttcgaatccacctaataatgtgatttaaatcatgcacatgatttttcagatttttaatgcataagaattgtatactcataactctgattcattctcatgt |
4710000 |
T |
|
| Q |
418 |
taatacttgaacattcat |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4709999 |
taatacttgaacattcat |
4709982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 6948928 - 6949012
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
6948928 |
tgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
6949012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 12335807 - 12335723
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| |||||||||| ||||||| |||| | ||||||||||||| | |||||||||||| |
|
|
| T |
12335807 |
tgcttggagagcctattgataatttaggtactgtagatactggcacaacctctcctattcatagatctgcacgtgcctttataca |
12335723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 12339993 - 12339909
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
12339993 |
tgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
12339909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 48938772 - 48938688
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
48938772 |
tgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
48938688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 19679356 - 19679440
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
19679356 |
tgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
19679440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 2549960 - 2549876
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
2549960 |
tgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
2549876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 18189161 - 18189077
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
18189161 |
tgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
18189077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 13239768 - 13239852
Alignment:
| Q |
26 |
tgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
110 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
13239768 |
tgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
13239852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University