View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_low_8 (Length: 402)
Name: NF12721_low_8
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_8 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 38073078 - 38072864
Alignment:
| Q |
3 |
aaaaaatgttgcgtcaagatgacgagcaaaacatgacttcactaagacaataaactaatgagaaaaaccaaatctatatagaaacgacttgtttaggtta |
102 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38073078 |
aaaaaatgttgcgtcaagataacgagcaaaacatgacttcactaagacaataaactaatgagaaaaaccaaatctatatagaaacgacttgtttaggtta |
38072979 |
T |
|
| Q |
103 |
aaggagggagggggaagatgcaaagaggtcattttgggc-aaataatgacccaaaatcacccctttccgatgaatgnnnnnnngaagaaatagcaaaatc |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
38072978 |
aaggagggagggggaagatgcaaagaggtcattttgggcaaaaaaatgacccaaaatcacccctttctgatgaatgaaaaaaagaagaaatagcaaaatc |
38072879 |
T |
|
| Q |
202 |
tatagaaaatgggaa |
216 |
Q |
| |
|
||||||||||||||| |
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|
| T |
38072878 |
tatagaaaatgggaa |
38072864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 216 - 396
Target Start/End: Complemental strand, 33814470 - 33814290
Alignment:
| Q |
216 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaat |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33814470 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccctgaat |
33814371 |
T |
|
| Q |
316 |
tttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttc |
396 |
Q |
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| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814370 |
tgtgcaccacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttc |
33814290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 216 - 396
Target Start/End: Original strand, 9754675 - 9754855
Alignment:
| Q |
216 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaat |
315 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
9754675 |
attgcttgattttggtctatatgatcaggctcatccatctgattgggttctgttagctgatcacgatcgtaattcatctgaggaatctctccccctgaat |
9754774 |
T |
|
| Q |
316 |
tttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttc |
396 |
Q |
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| || || ||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
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| T |
9754775 |
tgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctaatcttcatagaataccacatctctgcttc |
9754855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 216 - 396
Target Start/End: Original strand, 13563854 - 13564034
Alignment:
| Q |
216 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaat |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
13563854 |
attgcttgattttggtctatctgatcaggctcatccatctgattgggttctgttagctgatcacgatcgtaattcatttgaggaatctctccccctgaat |
13563953 |
T |
|
| Q |
316 |
tttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttc |
396 |
Q |
| |
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| || || ||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
13563954 |
tgtgtaccacaatggcctttggcttattagattgaatgtcgtgaattgtctgatcttcatagaataccacatctctgcttc |
13564034 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 216 - 396
Target Start/End: Original strand, 54969577 - 54969757
Alignment:
| Q |
216 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaat |
315 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||||||| ||||| |
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| T |
54969577 |
attgcttgattttggtctacctgatcaggctcatccatctgattgggttctgttagctgatcacgatcataattcatttgaggaatctctccccctgaat |
54969676 |
T |
|
| Q |
316 |
tttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttc |
396 |
Q |
| |
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| || || ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
54969677 |
tgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctgatcttcatagaataccacatctctacttc |
54969757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 4285574 - 4285666
Alignment:
| Q |
216 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccc |
308 |
Q |
| |
|
|||||||| ||||||| ||| |||||| ||| || ||||| ||| |||| || | ||||||| ||||| |||||| ||||||||||||||| |
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| T |
4285574 |
attgcttggttttgttatatgtgatcaagctacttcatcttattgggttgtgctttctgatcacaatcgttattcatttgaggaatctctccc |
4285666 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 216 - 396
Target Start/End: Complemental strand, 570 - 390
Alignment:
| Q |
216 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaat |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
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|
| T |
570 |
attgcttgattttggtctatctgatcaggctcatccatctgattgggttctgttagctgatcacgatcgtaattcatttgaggaatctctccccctgaat |
471 |
T |
|
| Q |
316 |
tttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttc |
396 |
Q |
| |
|
| || || ||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| |||| |
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|
| T |
470 |
tgtgtaccacaatggcctttggcttattagattgaatgtcgtgtattgtctgatcttcatagaataccacatctcttcttc |
390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 216 - 396
Target Start/End: Original strand, 4837881 - 4838061
Alignment:
| Q |
216 |
attgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaat |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
4837881 |
attgcttgattttggtctatctgatcaggctcatccatctgattgggttatgttagctgatcacgatcgtaattcatttgaggaatctctccccctgaat |
4837980 |
T |
|
| Q |
316 |
tttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttc |
396 |
Q |
| |
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| || || ||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
4837981 |
tgtgtaccacaatcgcctttggcttattagattgaatgtcgtggattgtctgatcttcatagaataccacatctctgcttc |
4838061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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