View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12721_low_9 (Length: 386)
Name: NF12721_low_9
Description: NF12721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12721_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 47478925 - 47479283
Alignment:
| Q |
11 |
cagagacatacactcaagggaatgccaaatacaagannnnnnnactatttcaatacaaactcagtaacaaacatcgtccaacagtaaaaacaactaagat |
110 |
Q |
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| T |
47478925 |
cagaggcatacactcaagggaatgccaaatacaagatttttttactatttcaatacaaactcagtaacaaacatcgtccaacagtaaaaacaactaagat |
47479024 |
T |
|
| Q |
111 |
aaatcaaaagccttccattgaagtagttcatgacaataagaataaaagctttctttcaagctcactttattcaaaataatttctttaagttggaaaattg |
210 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47479025 |
aaatcaaaagccttccattaaagtagtttatgacaataagaataaaagctttctttcaagctcactttattcaaaataatttctttacgttggaaaattg |
47479124 |
T |
|
| Q |
211 |
aaaacnnnnnnntccaagtctctttaaaattaacaaccatatcccttgacaaacattgccttcttagcttcatcgtatccaagcatagataacacattac |
310 |
Q |
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| T |
47479125 |
aaaacaaaaaaatccaagtatctttaaaattaacaaccatatcccttgacaaacattgccttcttagcttcatcgtatccaagcatagataacacattac |
47479224 |
T |
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| Q |
311 |
taacagagattagtgttatttccaagctgagccaaagaactagcttccaagcataacat |
369 |
Q |
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| T |
47479225 |
taacagagattagtgttatttccaagctgagccaaagaactagcttccaagcataacat |
47479283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 29435363 - 29435453
Alignment:
| Q |
75 |
taacaaacatcgtccaacagtaaaaacaactaagataaatcaaaagccttccattgaagtagttcatgacaataagaataaaagctttcttt |
166 |
Q |
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| T |
29435363 |
taacaaacatcatccaacagtaacaacaactaagataaatcaaagggtttccatagaagtagtgcataacaatatgaat-aaagctttcttt |
29435453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 96 - 286
Target Start/End: Original strand, 53428243 - 53428435
Alignment:
| Q |
96 |
aaaaacaactaagataaatcaaaagccttccattgaagtagttcatgacaataagaataaaagctttctttcaagctcactttattcaaaataattt-ct |
194 |
Q |
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||||| ||||||||||||||||| | ||| ||||| ||| |||||||| | ||||||||||||||||| |||||||| ||||||||||| |||| || |
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| T |
53428243 |
aaaaaaaactaagataaatcaaagactttctgttgaattagatcatgacagaatgaataaaagctttcttttaagctcacattattcaaaatcatttcct |
53428342 |
T |
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| Q |
195 |
ttaagttggaaaattgaaaac-nnnnnnntccaagtctctttaaaattaacaaccatatcccttgacaaacattgccttcttagcttcatcgt |
286 |
Q |
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||| ||||||||||||||| || |||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
53428343 |
acaagctggaaaattgaaaacaactcaaatctaagtctctttaaaattcataactatatcccttgacaagcattgccttcttagcttcatcgt |
53428435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 53428130 - 53428232
Alignment:
| Q |
12 |
agagacatacactcaagggaatgccaaatacaagannnnnnnactatttcaatacaaactcagtaacaaacatcgtccaacagtaaaaacaactaagata |
111 |
Q |
| |
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||||||||||||||||||||||| ||| ||| || ||||||||||| ||| ||| ||||||||||| |||||| |||| ||||||||||||| |
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| T |
53428130 |
agagacatacactcaagggaatgtcaactacg-gaatttttaactatttcaatggaaattcaataacaaacatcatccaacggtaacaacaactaagata |
53428228 |
T |
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| Q |
112 |
aatc |
115 |
Q |
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|||| |
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| T |
53428229 |
aatc |
53428232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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