View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_high_16 (Length: 262)
Name: NF12722_high_16
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35544859 - 35545105
Alignment:
| Q |
1 |
ttgtgggatttatgtttccatctgcagccggaaatttgttggaaaagcttctaattctttgatggcctttatggaatctgaattaccatcttgagcagca |
100 |
Q |
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| T |
35544859 |
ttgtgggatttatgtttccatctgcagccggaaatttgttggaaaagcttctaattctttgatggcctttatggaatctgaattaccatcttgagcagca |
35544958 |
T |
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| Q |
101 |
gcagcagaagattctccagctgatttctcttcctcaagttctgcggtaatctaattaaccaatagctaaagattgttaattcaaagatctcacttttcac |
200 |
Q |
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| T |
35544959 |
gcagcagaagattctccagctgatttctcttcctcaagttctgcggtaatctaattaaccaatagctaaagattgttaattcaaagatctcacttttcac |
35545058 |
T |
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| Q |
201 |
aaaacaaattatgtgcgacatgtctaacactctttttaacacttcat |
247 |
Q |
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| T |
35545059 |
aaaacaaattatgtgcgacatgtctaacactctttttaacacttcat |
35545105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 34990665 - 34990412
Alignment:
| Q |
2 |
tgtgggatttatgtttccatctgcagccggaa-atttgttggaaaagcttctaattctttgatggcctttatggaatctgaattaccatcttg------a |
94 |
Q |
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| T |
34990665 |
tgtgggatttatgtttccatctgcatccggcacatttgttgtaaaagcttctaattcttcattggcctttctggaatctgaattaccaggttgtgcagta |
34990566 |
T |
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| Q |
95 |
gcagcagcagcagaagattctccagctgatttctcttcctcaagttctgcggtaatctaattaaccaatagctaaagattgttaattcaaagat-ctcac |
193 |
Q |
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| T |
34990565 |
gcagcaacagcagaagattctccagctgatttctctttctccagttctgcagtaatctaattaaccaatagataaagattgttaattcaaagatactcac |
34990466 |
T |
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| Q |
194 |
ttttcacaaaacaaattatgtgcgaca---tgtctaacactctttttaacactt |
244 |
Q |
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| T |
34990465 |
ttttcataaaacaaaatatctgcgacacattctctaacactctttctcacactt |
34990412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 35553624 - 35553747
Alignment:
| Q |
6 |
ggatttatgtttccatctgcagccgga-aatttgttggaaaagcttctaattctttgatggcctttatggaatctgaattaccatcttgagcagcagcag |
104 |
Q |
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| T |
35553624 |
ggatttatgtttccatttgcagtcggagaagttgttggcaaagattcttattcttcaatggcctttttggaatctgaattaccatcttgagcagcagcag |
35553723 |
T |
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| Q |
105 |
cagaagattctccagctgatttct |
128 |
Q |
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| T |
35553724 |
aagaagattctccagctgatttct |
35553747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 35527742 - 35527836
Alignment:
| Q |
94 |
agcagcagcagcagaagattctccagctgatttctcttcctcaagttctgcggtaatctaattaaccaatagctaaagattgttaattcaaagat |
188 |
Q |
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| T |
35527742 |
agcagcagaagaagaagattctccagctgatttctctttctccagttctgcaataatctaattaaccaatacataaagattgttaattcaaagat |
35527836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35925619 - 35925589
Alignment:
| Q |
1 |
ttgtgggatttatgtttccatctgcagccgg |
31 |
Q |
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| T |
35925619 |
ttgtgggatttatgtttccatctgcagccgg |
35925589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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