View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_high_23 (Length: 228)
Name: NF12722_high_23
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 12118795 - 12118993
Alignment:
| Q |
14 |
caaaggaggagatgaaggaatcagggtccttagacttgaaagctctaagaaaggaccacatgttacctacgaagggccatcccatgtcaccaggtggtag |
113 |
Q |
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| T |
12118795 |
caaaggaggagatgaaggaatcagggtccttagacttgaaagctctaagaaaggaccacatgttaccaatgaagggccatcccatgtcaccaggtggtag |
12118894 |
T |
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| Q |
114 |
agagtactgcttcacacctaatttggattcatagagccaccaatttacatttttgagaatggatcttaagactaaaagaccaccaccaatggccataag |
212 |
Q |
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| T |
12118895 |
agagtactgcttcacacctaatttggattcatagagccaccaatttacatttttgagaatggatcttaagactaaaagaccaccaccaatggccataag |
12118993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 12107405 - 12107578
Alignment:
| Q |
25 |
atgaaggaatcagggtccttagacttgaaagctctaagaaaggaccacatgttacctacgaagggccatcccatgtcaccaggtggtagagagtactgct |
124 |
Q |
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| T |
12107405 |
atgaaagaatctgggtcattggacttgaatgctcttaggaaagaccacatattaccaacaattggccatcccatgtcacctggtggcaaagagtattgct |
12107504 |
T |
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| Q |
125 |
tcacacctaatttggattcatagagccaccaatttacatttttgagaatggatcttaagactaaaagaccacca |
198 |
Q |
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| T |
12107505 |
tagcaccaagttttgcttcatagagcaaccaattcacactcttgagaagggttcttaggataaaaagaacacca |
12107578 |
T |
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