View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_high_5 (Length: 371)
Name: NF12722_high_5
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 149 - 358
Target Start/End: Original strand, 6634056 - 6634265
Alignment:
| Q |
149 |
tcatcatttttctcaatttctttagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctccatagcttcactgtctttaacat |
248 |
Q |
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| T |
6634056 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctccatagcttcaccgtctttaacat |
6634155 |
T |
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| Q |
249 |
ccttagctgcatcgtccttattttcttcaacacctgcctctttgacactttcactttccttttgttcctcagcagctgaacttgtattgtcaacattatt |
348 |
Q |
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| T |
6634156 |
ccttagctgcatcgtccttattttcttcaacacctgcctctttgacactttcaatttccttttgttcctcagcagctgaacttgtattgtcaacattatt |
6634255 |
T |
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| Q |
349 |
gtttacgtct |
358 |
Q |
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||||| |||| |
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| T |
6634256 |
gtttatgtct |
6634265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 6633985 - 6634124
Alignment:
| Q |
18 |
attttttctcttcttcagtaccagcagcatcatcagcattgattttctcgtcattctttatcgatgcatgttcatcttttttctcaacttcagcagaagg |
117 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6633985 |
attttttctcttcttcagtatcagcagcaccatcagcattgattttctcgtcattctttatcgatgcatggtcatcttttttctcaacttcagcagaagg |
6634084 |
T |
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| Q |
118 |
ttcctccacaacatcattctccttcttttcttcatcattt |
157 |
Q |
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| T |
6634085 |
ttcctccacaacatcctcctctttctttccttcatcattt |
6634124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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