View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_high_9 (Length: 308)
Name: NF12722_high_9
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 297
Target Start/End: Complemental strand, 3629629 - 3629359
Alignment:
| Q |
39 |
gggtcttgaaactgaacagagctgcggcaagaagcaagaacacagaatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaat---- |
134 |
Q |
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| T |
3629629 |
gggtcttgaaactgaacagagctgcggcaagaagcaagaacacataatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaatcact |
3629530 |
T |
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| Q |
135 |
--------tctccttcctcagattcacctctcctttctcctttccaggtacacactttacttagcatttccccttataaatcacaacactaacaaaaaca |
226 |
Q |
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| T |
3629529 |
tcactctttctccttcctcagattcacttctcctttctcctttccaggtacacactttacttagcatttccccttataaatcacaacactaacaaaaaca |
3629430 |
T |
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| Q |
227 |
ctcaactatcatattcnnnnnnncaggtaaacatcattctcaacacacgttggcaacagaactagcttcat |
297 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629429 |
ctcagctatcatattctttttttcaggtaaacatcattctcaacacacgttggcaacagaactagcttcat |
3629359 |
T |
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