View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_1 (Length: 477)
Name: NF12722_low_1
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 24645896 - 24646341
Alignment:
| Q |
20 |
ctagtatctattgtgatcaagaatttttcaatttcagggatatataggaatgttgataattgcaggaccaaattggtgaaatccatattggatcttacaa |
119 |
Q |
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| T |
24645896 |
ctagtatctattgtgatcaagaatttttcaatttcagggatatataggaatgttgataattgcaggaccaaattggtgaaatccatattggatcttacaa |
24645995 |
T |
|
| Q |
120 |
ggtgcaagggtttagatccggttatctgtttggctccacataatactcaaactcaaccatcacatattagtctgctccaccaaagcatggtcaattgaca |
219 |
Q |
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| T |
24645996 |
ggtgcaagggtttagatccggttatctgtttggctccacataatactcaaactcaaccatcacatattagtctgctccaccaaagcatggtcaattgaca |
24646095 |
T |
|
| Q |
220 |
catgctttgtagaaaggatgcgtttcaaaaaacagtttaaatgaacactaatgacaacctaacttattcaagtggctttgaaacttaaaatttgcaaatt |
319 |
Q |
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| T |
24646096 |
catgctttgtagaaaggatgcgtttcaaaaaacagtttaaatgaacactaatgacaacctaactcattcaagtggctttgaaacttaaaatttgcaaatt |
24646195 |
T |
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| Q |
320 |
gtgttcttgcataggaaggggatatattaaacatggatcatctgtgatcaacttcatcgtcttcccaataaattcccaaactataagactagcaacaaaa |
419 |
Q |
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| T |
24646196 |
gtgttcttgcataggaaggggatatattaaacatggatcatctgtgatcaacttcatcgtcttcccaataaattcccaaactataagactagcaacaaaa |
24646295 |
T |
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| Q |
420 |
aatcacaatgatcataaattagtaattgtttgagaatcttgcagtg |
465 |
Q |
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| T |
24646296 |
aatcacaatgatcataaattagtaattgtttgagaatcttgcagtg |
24646341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 92 - 303
Target Start/End: Original strand, 24633114 - 24633322
Alignment:
| Q |
92 |
ttggtgaaatccatattggatcttacaaggtgcaagggtttagatccggttatctgtttggctccacataatactcaaactcaaccatcacatattagtc |
191 |
Q |
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| T |
24633114 |
ttggtgaaattcatactggatcttacaaggtgcaagggtttggatcgggttatctgtttcgctccacata---ctcaaactcaagcatcacatattattc |
24633210 |
T |
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| Q |
192 |
tgctccaccaaagcatggtcaattgacacatgctttgtagaaaggatgcgtttcaaaaaacagtttaaatgaacactaatgacaacctaacttattcaag |
291 |
Q |
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||||||||||||| |||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24633211 |
tgctccaccaaagtatggccaattgacatatgcttagtagaaaggatgtgtttcaaaaaacagtttaaatgaacacaaatgacaacctaacttattcaag |
24633310 |
T |
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| Q |
292 |
tggctttgaaac |
303 |
Q |
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||||| |||||| |
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| T |
24633311 |
tggctctgaaac |
24633322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 24633030 - 24633097
Alignment:
| Q |
27 |
ctattgtgatcaagaatttttcaatttcagggatatataggaatgttgataattgcaggaccaaattg |
94 |
Q |
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|||||||||| ||||||||||||||||||| |||| ||||||||||| || |||||||||||||||| |
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| T |
24633030 |
ctattgtgataaagaatttttcaatttcagatatatgtaggaatgttgttagttgcaggaccaaattg |
24633097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 24658983 - 24659042
Alignment:
| Q |
246 |
aaaaaacagtttaaatgaacactaatgacaacctaacttattcaagtggctttgaaactt |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||| | | |||||||||||| ||||| |
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| T |
24658983 |
aaaaaacagtttaattgaacactaatgacaacctaattaagacaagtggctttggaactt |
24659042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 24671775 - 24671812
Alignment:
| Q |
357 |
tcatctgtgatcaacttcatcgtcttcccaataaattc |
394 |
Q |
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|||||||||||||||| |||| |||||||||||||||| |
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| T |
24671775 |
tcatctgtgatcaactccatcctcttcccaataaattc |
24671812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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