View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_10 (Length: 322)
Name: NF12722_low_10
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 55825125 - 55824820
Alignment:
| Q |
1 |
ggagacggctttgtggtatgcagagatggaaaattctgcaaaagtggcaattgaacgtgaattaaggagatgtcgtcaacctgatagtacatcttcaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825125 |
ggagacggctttgtggtatgcagagatggaaaattctgcaaaagtggcaattgaacgtgaattaaggagatgtcgtcaacctgatagtacatcttcaccg |
55825026 |
T |
|
| Q |
101 |
atatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaacagaatgattagttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55825025 |
atatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaacagaatgattggttcttg |
55824926 |
T |
|
| Q |
201 |
cgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccatacaatttggaaaccatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824925 |
cgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccatacaatttggaaaccatg |
55824826 |
T |
|
| Q |
301 |
ttaatg |
306 |
Q |
| |
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|||||| |
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| T |
55824825 |
ttaatg |
55824820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 56149856 - 56150161
Alignment:
| Q |
1 |
ggagacggctttgtggtatgcagagatggaaaattctgcaaaagtggcaattgaacgtgaattaaggagatgtcgtcaacctgatagtacatcttcaccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149856 |
ggagacggctttgtggtatgcagagatggcaaattctgcaaaagtggcaattgaacgtgaattaaggagatgtcgtcaacctgatagtacatcttcaccg |
56149955 |
T |
|
| Q |
101 |
atatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaacagaatgattagttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
56149956 |
atatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaacagaatgattggttcttg |
56150055 |
T |
|
| Q |
201 |
cgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccatacaatttggaaaccatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56150056 |
cgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccatacaatttggaaaccatg |
56150155 |
T |
|
| Q |
301 |
ttaatg |
306 |
Q |
| |
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|||||| |
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|
| T |
56150156 |
ttaatg |
56150161 |
T |
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