View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_13 (Length: 296)
Name: NF12722_low_13
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_13 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 76 - 296
Target Start/End: Complemental strand, 15169550 - 15169330
Alignment:
| Q |
76 |
acatacagattccattactccaaaaacagtaattttcttctacagatcatgttatcaagttgtttactttaccgcaaaccacttatatactgttcctata |
175 |
Q |
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| T |
15169550 |
acatacagattccattactccaaaaacagtaattttcttctacatatcatgttatcaagttgtttactttaccgcaaaccacttatatactgttcctata |
15169451 |
T |
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| Q |
176 |
aataatagcttgtggaagaacaaaatattcatcacactagtgactatcaaaatcagttatccttcaatgaattctacacatttaattgaagagcaatcaa |
275 |
Q |
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| T |
15169450 |
aataatagcttgtggaagaacaaaatattcatcacactagtgactatcaaaatcagttctccttcaatgaattctacacatttaattgaagagcaatcaa |
15169351 |
T |
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| Q |
276 |
aggatggacaagaagaaaacc |
296 |
Q |
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| T |
15169350 |
aggatggacaagaagaaaacc |
15169330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15169759 - 15169680
Alignment:
| Q |
1 |
tacatattatgacaaacaaagaaactatccaccaaagaaacatgggttgtattattatgttgtgtcaatattaggacata |
80 |
Q |
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| T |
15169759 |
tacatattatgacaaacaaagaaactaaccaccaaataaatatgggttgtattattatgttgtgtcaataataggacata |
15169680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 15169678 - 15169600
Alignment:
| Q |
4 |
atattatgacaaacaaagaaactatccaccaaagaaacatgggttgtattattatgttgtgtcaatattaggacataca |
82 |
Q |
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| T |
15169678 |
atattatgacaaacaaagaaactaaccaccaaataaatatgagttgtattattatgttgtgtcaatattaggacataca |
15169600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 15172206 - 15172157
Alignment:
| Q |
241 |
aatgaattctacacatttaattgaagagcaatcaaaggatggacaagaag |
290 |
Q |
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| T |
15172206 |
aatggattctacacatttaatgggagagcaatcaaaggatggacaagaag |
15172157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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