View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_14 (Length: 288)
Name: NF12722_low_14
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 28153267 - 28153528
Alignment:
| Q |
19 |
actccatcaaccgaaatgctaaaaatgtcccctgatcttaaaagaggcatacatgttgaaatataacatttgaacaatcgtactcctccatctacaggat |
118 |
Q |
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| T |
28153267 |
actccatcaaccgaaatgctgaaaatgtcccctgatcttaaaagaggcacacatgttgaaatataacatttgaacaatcgtactcctccatctacaggct |
28153366 |
T |
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| Q |
119 |
cacatccattgcaacatgtctcctcaatgttattaccacccaatatggatgtattagtggtatttttctgcattttatcgcaagaaactttgcagcgtag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153367 |
cacatccattgcaacatgtctcctcaatgttattaccacccaatatggatgtattagtggtatttttctgcattttatcgcaagaaactttgcagcgtag |
28153466 |
T |
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| Q |
219 |
cctagtaatatgttagtgtgtagcctctaaagatcggatagattgttcagatttttcatctc |
280 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28153467 |
cctagtaatatgttagtgtgtagcctctaaagattggatagattgttcagatttttcatctc |
28153528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 28187988 - 28188127
Alignment:
| Q |
136 |
gtctcctcaatgttattaccacccaatatggatgtattagtggtatttttctgcattttatcgcaagaaactttgcagcgtagcctagtaatatgttagt |
235 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | || ||||||||||||| |
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| T |
28187988 |
gtctcctcaatggtattaccacccaatatggatgtattagtggtatttttctgcattttatcgcaagaa-----gaaacatcgcagcgtaatatgttagt |
28188082 |
T |
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| Q |
236 |
gtgtagcctctaaagatcggatagattgttcagatttttcatctc |
280 |
Q |
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| T |
28188083 |
gtgtagcctctaaagatcggatagactgttcagatttttcatctc |
28188127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 28060908 - 28060952
Alignment:
| Q |
236 |
gtgtagcctctaaagatcggatagattgttcagatttttcatctc |
280 |
Q |
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||||||||||||||| || |||||| ||||||||||||||||||| |
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| T |
28060908 |
gtgtagcctctaaaggtcagatagactgttcagatttttcatctc |
28060952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 28071333 - 28071377
Alignment:
| Q |
236 |
gtgtagcctctaaagatcggatagattgttcagatttttcatctc |
280 |
Q |
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| T |
28071333 |
gtgtagcctctaaaggtcagatagactgttcagatttttcatctc |
28071377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 28164156 - 28164200
Alignment:
| Q |
236 |
gtgtagcctctaaagatcggatagattgttcagatttttcatctc |
280 |
Q |
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||||||||||||||| || |||||| ||||||||||||||||||| |
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| T |
28164156 |
gtgtagcctctaaaggtcagatagactgttcagatttttcatctc |
28164200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 32610071 - 32610147
Alignment:
| Q |
40 |
aaaatgtcccctgatcttaaaagaggcatacatgttgaaatataacatttgaacaatcgtactcctccatctacagg |
116 |
Q |
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|||||||| |||||| ||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32610071 |
aaaatgtctcctgattctaaaactggcacacaggttgaaatgtaacatttgaacaatcgtactcctccatctacagg |
32610147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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