View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_17 (Length: 264)
Name: NF12722_low_17
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 35544747 - 35544503
Alignment:
| Q |
1 |
aatgattccaaaagacaccattgttttcttttctgttgttttagttgtatttaggaaggatgattaagaatttagttcccatgacaagattcatttttct |
100 |
Q |
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| T |
35544747 |
aatgattccaaaagacaccattgttttcttttctgttgttttagttgtatttaggaaggatgattaagaatttagttcccatgacaagattcatttttct |
35544648 |
T |
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| Q |
101 |
gttcatctattaattcttgttgaggaaagtgtactaaagatgatcatattagagttgtgaataatttcaatactttagtagtggatatgaaatttgtata |
200 |
Q |
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| T |
35544647 |
gttcatctattaattcttgttgaggaaagtgtactaaagatgatcatattagagttgtgaataatttcaatactttagtagtggatatgaaatctgtaca |
35544548 |
T |
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| Q |
201 |
atgggatattgtcaatgaaaattttctgtcatctattaattttgt |
245 |
Q |
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| T |
35544547 |
atgggatattgtcaatgaaaattttctgtcatctattaattttgt |
35544503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 34990780 - 34990892
Alignment:
| Q |
5 |
attccaaaagacaccattgttttcttttctgttgttttagttgtatttaggaaggatgattaagaatttagttcccatgacaagattcatttttctgttc |
104 |
Q |
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| T |
34990780 |
attccaaaagatattattgttttcttttcatttgttttagttgtttttagtaaagattcttaggaatttaatccccatgacatgattcatttttctg-tc |
34990878 |
T |
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| Q |
105 |
atctattaattctt |
118 |
Q |
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| T |
34990879 |
atctattaattctt |
34990892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 35527477 - 35527439
Alignment:
| Q |
207 |
tattgtcaatgaaaattttctgtcatctattaattttgt |
245 |
Q |
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| T |
35527477 |
tattgtcaatgaaaattttctgtcatctattaaatttgt |
35527439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 35527550 - 35527506
Alignment:
| Q |
58 |
ggatgattaagaatttagttcccatgacaagattcatttttctgt |
102 |
Q |
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| T |
35527550 |
ggatgattaggaatttagtttccatgacatgattcatttttctgt |
35527506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 35553510 - 35553465
Alignment:
| Q |
29 |
ttttctgttgttttagttgtatttaggaaggatgattaagaattta |
74 |
Q |
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| T |
35553510 |
ttttcttttcttttagttgtttttaggaaggatgattaggaattta |
35553465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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