View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_2 (Length: 420)
Name: NF12722_low_2
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_2 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 31106671 - 31106997
Alignment:
| Q |
18 |
acaagaaactttggatctgtttggagataaaaaggttaatgggataatgaaaatatataaacatcttcatccaattgggacccaccattgagatgataat |
117 |
Q |
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| T |
31106671 |
acaagaaactttggatctgttttgagataaaaaggttaatgggataatgaaaatatataagcatcttcatccaattgggacccaccattgagatgataat |
31106770 |
T |
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| Q |
118 |
aatactaagaaaagataactgaattgagaatgaagaataaatatcttggagnnnnnnncgagcgagtaggagaaagaagttataaccaccttgtagcact |
217 |
Q |
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| T |
31106771 |
aatactaggaaaagataactgaattgagaatgaagaataaatatcttggagaaaaaaacgagcgagtaggagaaagaagttataaccaccttgtagcact |
31106870 |
T |
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| Q |
218 |
cttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacctataaaataatattagtctatatctatacttcatattagtgtaaccgt |
317 |
Q |
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| T |
31106871 |
cttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacctataaaataatattagtctatatctatacttcatattagtgtaaccgt |
31106970 |
T |
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| Q |
318 |
ttggaaccaattactttgtgttcttca |
344 |
Q |
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| T |
31106971 |
ttggaacctattactttgtgttcttca |
31106997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 31050641 - 31050702
Alignment:
| Q |
80 |
atcttcatccaattgggacccaccattgagatgataataatactaagaaaagataactgaattga |
144 |
Q |
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| T |
31050641 |
atcttcatccaa---ggacacaccattgagataataataatactaagaaaagagaattgaattga |
31050702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 31107034 - 31107067
Alignment:
| Q |
387 |
gtggacaaatcttctttttgaagtcaattagatt |
420 |
Q |
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| T |
31107034 |
gtggacaaatcttctttttgaagtcaattagatt |
31107067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 3355 - 3282
Alignment:
| Q |
71 |
tatataaacatcttcatccaattgggacccaccattgagatgataataata---ctaagaaaagataactgaattga |
144 |
Q |
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| T |
3355 |
tatataagcatcttcatccaa---ggagccaccattgagataataataataatactaagaaaagagaattgaattga |
3282 |
T |
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