View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_21 (Length: 250)
Name: NF12722_low_21
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 24183861 - 24183650
Alignment:
| Q |
22 |
aacatcaaagaaaaccaatcctaaaccaatgcaccagatttccactttagatagaacaaacctgcaaaacatcagagaaaaccaccccaaaaagaaaatt |
121 |
Q |
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| T |
24183861 |
aacatcaaagaaaaccaatcctaaaccaatgcaccagatttccactttagatagaacaaacctacaaaacatcagagaaaaccaccccaaaaataaaatt |
24183762 |
T |
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| Q |
122 |
gactagatcaatgaagtaaaagaaaccaaccaatcaaaaccctaattacgagcattaagaatccttccaatctcaaatgaaacaaaagcatcaatacatg |
221 |
Q |
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| T |
24183761 |
aactagatcaatgaagtaagagaaaccaaccaatc-aaaccctagttacgagcattaagaatccttccaatctcaaatgaaacaaaagcatcaatacatg |
24183663 |
T |
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| Q |
222 |
catactgaacttg |
234 |
Q |
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| T |
24183662 |
catactgaacttg |
24183650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 24183904 - 24183845
Alignment:
| Q |
46 |
accaatgcaccagatttccactttagatagaacaaacctgcaaaacatcagagaaaacca |
105 |
Q |
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| T |
24183904 |
accaatgcaccagatttccattctagacagcacaaacctacagaacatcaaagaaaacca |
24183845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 51947378 - 51947322
Alignment:
| Q |
178 |
aagaatccttccaatctcaaatgaaacaaaagcatcaatacatgcatactgaacttg |
234 |
Q |
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| T |
51947378 |
aagaagccttccaacctcaaacgagataaaagcatcaacacatgcatattgaacttg |
51947322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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