View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_3 (Length: 406)
Name: NF12722_low_3
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 2761487 - 2761293
Alignment:
| Q |
19 |
gtgttgacgacatatctaaaaagtttggggaagaaacagattgttacattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcgta |
118 |
Q |
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| T |
2761487 |
gtgttgacgacatatctaaaaagtttgggcaagaaacagattgttacattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcgta |
2761388 |
T |
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| Q |
119 |
ctctacgttttgtcttcatcatgaaactaccgcagnnnnnnnnnnnnnnnnncctcctaaagctgaaaaccttccatgatggaccaatggtttgtgtg |
216 |
Q |
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| T |
2761387 |
ctctacgttttgtcttcatcatgaaactaccgcagctactactactacta---ctcctaaagctgaaaaccttccatgatggaccaatggtttgtgtg |
2761293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 285 - 395
Target Start/End: Complemental strand, 2761183 - 2761079
Alignment:
| Q |
285 |
ttaaataacctttatgggccagtcctcttaattatattgtgctatgatatcatgcatggttgtacttatatatatatccagaatttaaataaaatttcta |
384 |
Q |
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| T |
2761183 |
ttaaataacctttatgggccagtcctcttaattatattgtgctatgatat----catggttgtact--tatatatatccagaatttaaataaaatttcta |
2761090 |
T |
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| Q |
385 |
gtgtttttctt |
395 |
Q |
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| T |
2761089 |
gtgtttttctt |
2761079 |
T |
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