View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_4 (Length: 404)
Name: NF12722_low_4
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 7746334 - 7746710
Alignment:
| Q |
12 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaagactaccaagtttgtttgaagatggt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7746334 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaaaactaccaagtttgtttgaagatggt |
7746433 |
T |
|
| Q |
112 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7746434 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
7746533 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaattatcagtggcagaagcagctgtaaatgcattagagtcagtgcaaccagtaataaagtcagggatttggatttt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7746534 |
tttttggtaagtttttaagagggaaattatcagtggcagaagcagctgtaaatgcattagagtcagtgcaaccagtaataaagtcagggatttggatttt |
7746633 |
T |
|
| Q |
312 |
agattttggtatgaacaaaaaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgttag |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7746634 |
agattttggtatgaacaaaaaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgttag |
7746710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 386
Target Start/End: Complemental strand, 7711258 - 7710887
Alignment:
| Q |
12 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaagactaccaagtttgtttgaagatggt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
7711258 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccacctatgaatatactaccaagtttgtttgaagatggt |
7711159 |
T |
|
| Q |
112 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7711158 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
7711059 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaattatcagtggcagaagcagctgtaaatgcattagagtcagtgcaaccagtaataaagtcagggatttggatttt |
311 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| | ||| || | | | |||||||||||||||||||||||||| |||||||||| || || |||||| |
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|
| T |
7711058 |
tttttggtaagtttttgagagggaa---atcagagtcagcagaatcagcaaatgcattagagtcagtgcaaccagagataaagtcagagactttgatttt |
7710962 |
T |
|
| Q |
312 |
agattttggtatgaacaaaaaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgtt |
386 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
7710961 |
agattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattatgtt |
7710887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 386
Target Start/End: Complemental strand, 7733568 - 7733197
Alignment:
| Q |
12 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaagactaccaagtttgtttgaagatggt |
111 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||| |||||||| || | |||| ||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
7733568 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaagactaccaagattgtttgaagatggt |
7733469 |
T |
|
| Q |
112 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7733468 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
7733369 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaattatcagtggcagaagcagctgtaaatgcattagagtcagtgcaaccagtaataaagtcagggatttggatttt |
311 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| | ||| || | | | |||||||||||||||||||||||||| |||||||||| || || |||||| |
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|
| T |
7733368 |
tttttggtaagtttttgagagggaa---atcagagtcagcagaatcagcaaatgcattagagtcagtgcaaccagagataaagtcagagactttgatttt |
7733272 |
T |
|
| Q |
312 |
agattttggtatgaacaaaaaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgtt |
386 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
7733271 |
agattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattatgtt |
7733197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 7726146 - 7725785
Alignment:
| Q |
12 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaagactaccaagtttgtttgaagatggt |
111 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||| |||||||| || | |||| |||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
7726146 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaataaaaagactaccaagattgtttgaagatggt |
7726047 |
T |
|
| Q |
112 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7726046 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcctaatatacctttactag |
7725947 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaattatcagtggcagaagcagctgtaaatgcattagagtcagtgcaaccagtaataaagtcagggatttggatttt |
311 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |
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| T |
7725946 |
tttttggtaagtttttaagagggaaat---------------catcggtaaatgcagccgagtcagtgcaaccagaaataaagtcagggatatggatttt |
7725862 |
T |
|
| Q |
312 |
agattttggtatgaacaaaaaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgttag |
388 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7725861 |
agattttggtatgaacaaagaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgttag |
7725785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 7699235 - 7698999
Alignment:
| Q |
12 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaa----ttagatgg--taccccaccaatgaaaagactaccaagt------ttg |
99 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||||| |||| || | ||| || |||||||||||| || ||||||||| ||| |
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|
| T |
7699235 |
aaaggggttaataacaagaggaattttagtgagttgaaacttgaaaaaagaactttgttggggtatcccaccaatgaagaggctaccaagtcctttcttg |
7699136 |
T |
|
| Q |
100 |
tttgaagatggtaaacaaagaacaaacttgttaagaattttttgaggagc---taatgaaagctgttttggtaatgaaagtggtgttcttgcaaggccta |
196 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||| || |||| || | |||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
7699135 |
tttgaagatggtaaacaaagagcaaatttgttaggaagcttatgagaagaagatgatgaaagctgttttggtagtgaaagttttgttcttgcaaggccta |
7699036 |
T |
|
| Q |
197 |
atatacctttactagtttttggtaagtttttaagagg |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
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|
| T |
7699035 |
atatccctttactagtttttggtaagtttttaagagg |
7698999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 7698929 - 7698862
Alignment:
| Q |
321 |
tatgaacaaaaaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgttag |
388 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
7698929 |
tatgaacaaaacatcattgccagtgtcacctacaaaaatagcattgactaatgggttaattatgttag |
7698862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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