View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_6 (Length: 382)
Name: NF12722_low_6
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 14341359 - 14341008
Alignment:
| Q |
17 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagaggggtcatcaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14341359 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccaactgatatatgtagaggggtcatcaca |
14341260 |
T |
|
| Q |
117 |
tgcaaagccataaaatgttccattttttatggacttc---ccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggatttata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14341259 |
tgcaaagccataaaatgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggattcata |
14341160 |
T |
|
| Q |
214 |
aaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgataatttaaagataacaaaaacttaattgaacat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14341159 |
aaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgatcatttaaagataacaaaaacttaattgaacat |
14341060 |
T |
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| Q |
314 |
aattaccttggctccttgcattgctgataagtgtatatttgactgtgtaaac |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14341059 |
aattaccttggctccttgcattgctgataagtgtatatttgactgtgtaaac |
14341008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 93 - 365
Target Start/End: Complemental strand, 3602400 - 3602128
Alignment:
| Q |
93 |
gatatatgtagaggggtcatcacatgcaaagccataaaatgttccattttttatggacttc---ccacaataatgtatttcgttaccttggtaacttcca |
189 |
Q |
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| T |
3602400 |
gatatatgtagaggaatcatcacatgcaatgccataaactgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttcca |
3602301 |
T |
|
| Q |
190 |
caacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgataatttaaa |
289 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3602300 |
caacaaaattccaatggattcacaaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgatattttaaa |
3602201 |
T |
|
| Q |
290 |
gataacaaaaacttaattgaacataattaccttggctccttgcattgctgataagtgtatatttgactgtgtaaac |
365 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
3602200 |
gataacaaaaacttaattgaac---attaccttggttccttgcattgctgataagtgtatatttgaccgtgtaaac |
3602128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 3569570 - 3569487
Alignment:
| Q |
180 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
263 |
Q |
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|||||||||||| ||||||||||||||||| | || |||| |||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
3569570 |
gtaacttccacagcaaaattccaatggattcacaagacctaccacaaatcatgcaagattaaaaattaaaacttaattgtgcac |
3569487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 3577296 - 3577213
Alignment:
| Q |
180 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
263 |
Q |
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| T |
3577296 |
gtaacttccacagcaaaatttcaatggatttacaaaaccagccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3577213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 3602453 - 3602399
Alignment:
| Q |
17 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttggga |
71 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
3602453 |
cagagaaggaaccatagagaatttgtttagcaatccattcctttgctgcttggga |
3602399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 3591637 - 3591554
Alignment:
| Q |
180 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
263 |
Q |
| |
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|||| ||||||| || ||| ||||||||| | ||||||||||||||||| |||||| |||||| |||| |||||| ||||||| |
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| T |
3591637 |
gtaatttccacagaaatatttcaatggattcacaaaacctgccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3591554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 3569173 - 3569123
Alignment:
| Q |
315 |
attaccttggctccttgcattgctgataagtgtatatttgactgtgtaaac |
365 |
Q |
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|||||| ||||||||||| |||||||||||| | ||||| ||||||||||| |
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| T |
3569173 |
attaccctggctccttgcgttgctgataagtttctattttactgtgtaaac |
3569123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 1410059 - 1409817
Alignment:
| Q |
17 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagaggggtcatcaca |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||||| |||||| ||||| |||||||||||||||||||| || |||| | |||| || | |||||| |
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| T |
1410059 |
cagagaaggaaccatagagaatttgtttagcaacccattgatttgcagcttgagagtagtgtataccatcccaactaatatgtttagaaggattatcaca |
1409960 |
T |
|
| Q |
117 |
tgcaaagccataaaatgttccattttttatggacttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggatttataaaa |
216 |
Q |
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|| | |||||||| |||||||||| |||||| |||| | | ||| ||| | || ||| | |||||||||||| ||||||||||||||||| | |||| |
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| T |
1409959 |
tggattgccataaactgttccatttattatggccttcaacccacaatttatgtggtaaccatagtaacttccacagcaaaattccaatggattcacaaaa |
1409860 |
T |
|
| Q |
217 |
cctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
263 |
Q |
| |
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|||||||||||| ||||||| | ||||||||| ||||||||||| |
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| T |
1409859 |
cctgccacaaat----caagcatgagagttaaaacctaattgtgcac |
1409817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 1409581 - 1409534
Alignment:
| Q |
315 |
attaccttggctccttgcattgctgataagtgtatatttgactgtgta |
362 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||||| ||||||| |
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|
| T |
1409581 |
attaccttggctctttgcattgctaataagtttatatttggctgtgta |
1409534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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