View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12722_low_9 (Length: 334)
Name: NF12722_low_9
Description: NF12722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12722_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 55825440 - 55825115
Alignment:
| Q |
9 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825440 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
55825341 |
T |
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| Q |
109 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825340 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
55825241 |
T |
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| Q |
209 |
aaaagaaagaggcagttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825240 |
aaaagaaagaggcagttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
55825141 |
T |
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| Q |
309 |
aacaaaggctgcaatggagacggctt |
334 |
Q |
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|||||||||||||||||||||||||| |
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| T |
55825140 |
aacaaaggctgcaatggagacggctt |
55825115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 56149541 - 56149866
Alignment:
| Q |
9 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149541 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
56149640 |
T |
|
| Q |
109 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149641 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
56149740 |
T |
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| Q |
209 |
aaaagaaagaggcagttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149741 |
aaaagaaagaggcagttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
56149840 |
T |
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| Q |
309 |
aacaaaggctgcaatggagacggctt |
334 |
Q |
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|||||||||||||||||||||||||| |
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| T |
56149841 |
aacaaaggctgcaatggagacggctt |
56149866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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