View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_high_11 (Length: 306)

Name: NF12723_high_11
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_high_11
NF12723_high_11
[»] chr1 (16 HSPs)
chr1 (12-296)||(13244659-13244943)
chr1 (11-257)||(30368245-30368491)
chr1 (36-178)||(13271474-13271616)
chr1 (51-179)||(12964052-12964180)
chr1 (43-262)||(13085911-13086130)
chr1 (36-255)||(13100812-13101030)
chr1 (36-257)||(13007009-13007230)
chr1 (36-257)||(13204268-13204489)
chr1 (36-187)||(13070338-13070489)
chr1 (11-187)||(13094278-13094454)
chr1 (11-187)||(13129707-13129883)
chr1 (11-187)||(13161400-13161576)
chr1 (36-179)||(19279330-19279473)
chr1 (11-262)||(13081002-13081253)
chr1 (36-129)||(13065375-13065468)
chr1 (100-178)||(13010661-13010739)
[»] chr6 (1 HSPs)
chr6 (56-145)||(31380253-31380342)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 13244659 - 13244943
Alignment:
Q  12 agatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagct 111  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244659 agatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagct 13244758  T
Q  112 tcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcg 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244759 tcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcg 13244858  T
Q  212 catgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtg 296  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244859 catgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtg 13244943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 30368245 - 30368491
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||  ||||| |||||||   |||||| ||||||| ||||||||||||||||| |||||| |||| |||||||||||||| || |||||||||||     
T  30368245 gagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 30368344  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttc 210  Q
    |||||||||||||| |||||||||||| | ||||| |||||||||| |||| |||| |||||||||||||||||||| |  ||  ||||| ||||| ||     
T  30368345 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttctgttgtccttt 30368444  T
Q  211 gcatgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga 257  Q
    | ||||| || ||||| || ||| | || | ||||||||||||||||    
T  30368445 gaatgaaacatggcttgaacgtcaaggttactaaaagatgcatttga 30368491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 13271616 - 13271474
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||  |||||||||||||||||||||    
T  13271616 attatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcag 13271517  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtca 178  Q
    ||||| | || |||||||||| |||| | ||||||||||||||    
T  13271516 cttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 12964052 - 12964180
Alignment:
Q  51 tcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttgtgga 150  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||  | |||||||||    
T  12964052 tcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtgga 12964151  T
Q  151 agtttcgcataaaggtggtggaaggtcac 179  Q
    |||||| |||| | |||||||||||||||    
T  12964152 agtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 13086130 - 13085911
Alignment:
Q  43 atgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttcttt 142  Q
    ||||||| |||| ||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||| | |||||||||||||||||||||||| || |    
T  13086130 atgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctat 13086031  T
Q  143 gttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcgaagtcagt 242  Q
    ||| |||||||||| |||| | || |||||||||||  ||||||| |  |||  |||||||||  | |||||| | || || || || ||| |||| |||    
T  13086030 gttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagt 13085931  T
Q  243 aaaagatgcatttgatataa 262  Q
    |||||||| |||||||||||    
T  13085930 aaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 13101030 - 13100812
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| ||||||||||||||||| |||||| |||| |||||||||||||| || || ||| |||||||| |||||||||| ||||| ||||    
T  13101030 attatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcag 13100932  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcga 235  Q
    || |||||||   |||||||| |||| |||||||||||||||||||| |||| | ||    |||| ||||  ||| |||||| || ||||| |||||| |    
T  13100931 ctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaa 13100832  T
Q  236 agtcagtaaaagatgcattt 255  Q
    ||||| ||||||||||||||    
T  13100831 agtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 257
Target Start/End: Complemental strand, 13007230 - 13007009
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||||| || || ||| |||||||| |||||||||| ||||| ||||    
T  13007230 attatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcag 13007131  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcga 235  Q
    |  |||||||    ||||||| |||||||||||||| |||||||||| |||| | ||    |||| ||||  ||| |||||| || ||||| |||||  |    
T  13007130 cagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaa 13007031  T
Q  236 agtcagtaaaagatgcatttga 257  Q
    ||||| ||||||||||||||||    
T  13007030 agtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 257
Target Start/End: Complemental strand, 13204489 - 13204268
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||| | || ||||||||||| ||| |||||||||| ||||| ||||    
T  13204489 attatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcag 13204390  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcga 235  Q
    || |||||||   ||| |||| ||||||| | |||||||||||||||||||| |  |  | |||| ||||  ||| ||||||  | || ||||||||  |    
T  13204389 ctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaa 13204290  T
Q  236 agtcagtaaaagatgcatttga 257  Q
    ||||| ||||||||||||||||    
T  13204289 agtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 13070338 - 13070489
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| |||| || ||||||||||||||||| |||||| ||||||| ||||||||| | || ||||||||||| ||| |||||||||| ||||| ||||    
T  13070338 attatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcag 13070437  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    || |||||||   |||||||| |||| |||||||||||||||||||||||||    
T  13070438 ctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13094454 - 13094278
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| ||| | ||| ||||  |||||| ||||||| ||||||||||||||||| |||||  |||| || |||| |||||| || |||||| ||||     
T  13094454 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagt 13094355  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    ||| |||||||||| ||||| |||||| |||||||  ||||||||| |||| |||||||||||||||||||||||||    
T  13094354 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13129883 - 13129707
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| ||| | ||| ||||  |||||| ||||||| |||||||||||| |||| |||||  |||| || |||| |||||| || |||||||||||     
T  13129883 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagt 13129784  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    ||| |||||||||| ||||| |||||| |||||||   |||||||| |||| |||||||||||||||||||||||||    
T  13129783 ttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13161576 - 13161400
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| ||| | ||| ||||  |||||| ||||||| ||||||||||||||| | |||||  |||| || |||| |||||| || |||||||||||     
T  13161576 gagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagt 13161477  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    ||| |||||||||| ||||| |||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||||    
T  13161476 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 19279330 - 19279473
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| || |||||||||||||| || ||||||||||| ||||| ||| | || |||||| |||  ||| |||||||||||||||||||||    
T  19279330 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 19279429  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcac 179  Q
    || || | || ||||||||||||||| |||| ||||||||||||    
T  19279430 ctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 13081002 - 13081253
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| |||||  ||||||   |||||| | || |||||||| ||||||||||| || ||||||||||| ||||| ||| ||||||||||| ||||     
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagt 13081101  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttc 210  Q
    ||  ||||||||||||||||||||||| |  | || |  ||||||| |||  ||||||||||||||||| |  |||  |  ||   ||||||| || |||    
T  13081102 tttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaataattcctagggtttctattctccttc 13081201  T
Q  211 gcatgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataa 262  Q
    ||||| | || ||||| |||||| || |  ||||||||||||||||||||||    
T  13081202 gcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 13065375 - 13065468
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatgg 129  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||| | || |||||| | | ||||||| ||||||| ||||    
T  13065375 attatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 13065468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 13010739 - 13010661
Alignment:
Q  100 aagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtca 178  Q
    |||||||||| ||| ||| |||||| ||||| ||||||  |||||| ||||| ||||||||| | ||||||||||||||    
T  13010739 aagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 31380253 - 31380342
Alignment:
Q  56 caagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgtt 145  Q
    |||||||||| | |||||| |||| ||  ||||||||||||| ||||||||||| ||| ||||||| || |||  ||| |||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgtt 31380342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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